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Physical processes in ecosystems: Educational modules introducing biophysical ecology and use of the TrEnChR package.

Home Page: https://bookdown.org/huckley/Physical_Processes_In_Ecosystems/

License: Creative Commons Zero v1.0 Universal

Dockerfile 0.15% Shell 0.64% TeX 1.54% CSS 2.66% HTML 95.01%
ecology-modelling biophysics energy bookdown educational-resources

trenchrmodules's Introduction

TrEnCh: Tools for TRanslating ENvironmental CHange into organismal responses

Climate change models often predict ecological responses using coarse measurements of air temperature. But animals experience their environment at much finer resolution, responding to changes in environmental conditions at the scale of minutes and meters. We provide computational and visualization tools that translate coarse air temperature models into fine-scale predictors of how animals and ecosystems will respond to climate change. If we’re going to effectively fight climate change, we need to understand what it means for the plants, animals, and ecosystems on our planet.

Project components:

  • TrenchR: An R package for environmental and ecological biophysics, TrechR offers microclimate models as well as accessible energy budget models to translate microclimate into estimates of animal body temperature.
  • TrEnCh-ed: interactive data visualizations for education
  • TrEnCh-ir: thermal image respository for image conversion, storage, and education.
  • TrEnCh-map: Visualizations exploring organismal responses to environmental conditions.

trenchrmodules's People

Contributors

avmey avatar lbuckley avatar ys634 avatar

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trenchrmodules's Issues

Problems to go over

ch. 10 problem 9:
The last part on the table, "Time to reach 25 C" is completely off from what I got by integrating the specified equation (10.10) and calculating the value. Everything up to there looks good.

ch. 12 problem 7:
The value of Z_f is very off from what I got, and stuck here.

ch. 9 problems 6, 7:
Very complicated.

check bookdown issue

Use "bookdown::render_book('index.Rmd', 'bookdown::pdf_book')" command to check output. (Will take a long time to run).

These are warming messages I receive. Would appreciate your addressing.

Warning message:
LaTeX Warning: Label radiation' multiply defined. LaTeX Warning: Label eq:radiation-5' multiply defined.
LaTeX Warning: Label eq:soil-11' multiply defined. LaTeX Warning: Reference eq:calcdif-calcdif-1' on page 66 undefined on input l
ine 2521.
LaTeX Warning: Reference eq:calcdif-3' on page 74 undefined on input line 2770 . LaTeX Warning: Reference eq:calcdif-3' on page 76 undefined on input line 2820
.
LaTeX Warning: Reference eq:calcdif-2' on page 76 undefined on input line 2829 . LaTeX Warning: Reference eq:physics-physics-8' on page 140 undefined on input
line 5845.
LaTeX Warning: Reference eq:physics-11' on page 141 undefined on input line 59 22. LaTeX Warning: Reference eq:physics-11' on page 141 undefined on input line 59
27.
LaTeX Warning: Reference eq:thermintro-thermintro-2' on page 158 undefined on input line 6656. LaTeX Warning: Reference eq:thermintro-3' on page 158 undefined on input line
6680.
LaTeX Warning: Reference `eq:thermex-2' on page 169 undefined o [... truncated]

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