Topic: wdl-workflow Goto Github
Some thing interesting about wdl-workflow
Some thing interesting about wdl-workflow
wdl-workflow, Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integration Center) to process data. Tibanna supports CWL/WDL (w/ docker), Snakemake (w/ conda) and custom Docker/shell command.
Organization: 4dn-dcic
wdl-workflow,RNA binding workflow geared towards broad discovery of binding sites
User: alexmondaini
wdl-workflow,Variant Calling and Annotation using PacBio Hi-Fi Reads
User: anand-imcm
wdl-workflow,A workflow for processing metagenomics data sets using Centrifuge. Category:Single-Sample
Organization: biowdl
Home Page: https://biowdl.github.io/sequence-classification
wdl-workflow,Broad fungal method repository
Organization: broadinstitute
wdl-workflow,A command-line tool for executing, managing, and querying WDL workflows on Cromwell servers.
Organization: broadinstitute
wdl-workflow,WDL tasks for commonly used BFX tools
Organization: chopdgd
wdl-workflow,[Experimental] Workflow Definition Language (WDL) to CWL
Organization: common-workflow-lab
Home Page: https://github.com/common-workflow-lab/wdl-cwl-translator
wdl-workflow,Focused on constructing a phylogenetic tree from Philippine strains of Candida albicans.
User: faithgriffin
wdl-workflow,Tutorial for running the fastq_subsample WDL workflow on AnVIL!
Organization: fhdsl
Home Page: https://hutchdatascience.org/AnVIL_Data_Subsetting/
wdl-workflow,Workflow Description Language (WDL) test workflow. Write custom messages as file outputs. For testing Cloud WS APIs and the GA4GH Starter Kit.
Organization: ga4gh-tech-team
wdl-workflow,Workflow Description Language (WDL) test workflow. Write hardcoded messages to stdout. For testing Cloud WS APIs and the GA4GH Starter Kit.
Organization: ga4gh-tech-team
wdl-workflow,This is the repository for the WDL and JSON files accompanying the WDL 101 course.
Organization: getwilds
wdl-workflow,A basic starting point for a cell ranger workflow
Organization: getwilds
wdl-workflow,Self-contained WDL workflow that converts a WGS FASTQ file into an unmapped CRAM file
Organization: getwilds
wdl-workflow,Workflow to download paired fastqs from SRA and pass through STAR 2 pass
Organization: getwilds
wdl-workflow,A demo repo to help folks run Star on RNA seq data and do DEseq2
Organization: getwilds
wdl-workflow,A pipeline for mitochondrial mutation calling
User: jvandinter
wdl-workflow,Java based workflow generator to deploy WES variant detection pipelines on Kubernetes using Argo. Reads WDL files and produces Argo compatible work flows specifciying compute cluster environment (pod) on which the workflow component should be executed and the buckets in which the results should be dropped
User: lvn3668
Home Page: https://lvn3668.github.io/
wdl-workflow,Workflow for metagenome assembly
Organization: microbiomedata
wdl-workflow,A collection of tasks wrapped in WDL
Organization: mobidl
wdl-workflow,Strelka2 somatic variant calling workflow
Organization: oicr-gsi
wdl-workflow,Command line tool to run batch jobs concurrently with ETL framework on AWS or other cloud computing resources
User: otiai10
Home Page: https://hotsub.github.io/
wdl-workflow,WDL workflow language program, developed for singlecell rna sequencing data analysis, maintained by @SunHao(OOAAHH)
Organization: rnacentre
wdl-workflow,WDL pipelines for the Sentieon tools
Organization: sentieon
wdl-workflow,A package manager for Workflow Description Language files.
Organization: stjude-rust-labs
wdl-workflow,Rust crates for working with Workflow Description Language (WDL) documents.
Organization: stjude-rust-labs
wdl-workflow,An opinionated Cromwell orchestration manager.
Organization: stjudecloud
Home Page: https://stjudecloud.github.io/oliver
wdl-workflow,Request for Comments (RFCs) on the St. Jude Cloud Project.
Organization: stjudecloud
Home Page: https://stjudecloud.github.io/rfcs/
wdl-workflow,Create WDL documentation using Markdown.
Organization: stjudecloud
wdl-workflow,Bioinformatics workflows developed for and used on the St. Jude Cloud project.
Organization: stjudecloud
wdl-workflow,A cloud-based pipeline to estimate telomere lengths from WGS data using Telseq
User: weinstockj
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