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Jian's Projects

3d-ae icon 3d-ae

an autoencoder with an architecture designed from the ground up for task-fMRI data to explore the nonlinear latent space representation of data.

brainparts icon brainparts

NMF Code for calculating components from Brain imaging data.

brainradiomicstools icon brainradiomicstools

A radiomics tool with a variety of brain MRI processing functions, including affine registration, hippocampus segmentation and feature calculation.

cca_zoo icon cca_zoo

cca-zoo: a python package for implementing regularized, deep and probabilistic variants of canonical correlation analysis and partial least squares models.

combat.py icon combat.py

python / numpy / pandas / patsy version of ComBat for removing batch effects.

confounds icon confounds

Conquering confounds and covariates in machine learning

control_package icon control_package

A toolbox for implementing Network Control Theory analyses in python

cosn-nilearn icon cosn-nilearn

Materials for the Chinese Open Science Network (COSN) Nilearn workshop

cpc_2020 icon cpc_2020

Code & data for Computational Psychiatry Course 2020 Practical on Normative Modeling

data_analysis icon data_analysis

This repo details several specific analyses of neuroimaging/neurophysiology data, like power calculations for M/EEG.

edgetunnel icon edgetunnel

在原版的基础上修改了显示 VLESS 配置信息转换为订阅内容。使用该脚本,你可以方便地将 VLESS 配置信息使用在线配置转换到 Clash 或 Singbox 等工具中。

effective_connectivity_toolbox icon effective_connectivity_toolbox

hese scripts aim at computing the effective connectivity by using functional and structural MRI data, as in A.Crimi et al. "Effective Brain Connectivity Through a Constrained Autoregressive Model" MICCAI 2016

flameshot icon flameshot

Powerful yet simple to use screenshot software :desktop_computer: :camera_flash:

functionnectome icon functionnectome

Project your functional brain signal onto the white matter, and explore the pathways supporting brain functions.

gamlss icon gamlss

In this repo, I work on the implementation of the R\gamlss package in Python.

gpr_neovols icon gpr_neovols

A method and normative dataset for individualised characterisation of early volumetric development in newborn infants.

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