Comments (2)
Hi @Jayesh-Kumar-Sundaram, sorry for the belated response. No changes to my knowledge have been made to this parameter in recent releases.
However, note that this package functions by calling the “leidenalg” module in Python. If this has been updated, it is possible that the seed parameter passed to it may have different results. I suggest checking the release notes here:
https://github.com/vtraag/leidenalg
You can also control the version of the Python module by running R in a coda environment (default name “r-reticulate” is recommended).
Note that in a future release (dev/0.4.0), I will migrate to calling the igraph version discussed in #1 which may lead to different results as well.
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Note that there have not been major updates to the package functionality since version 0.3.6 in December 2020. Unless you were using an older version before then I wouldn’t expect any changes.
See here for details:
https://github.com/TomKellyGenetics/leiden/blob/master/NEWS.md
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Related Issues (20)
- "pandas" error while installing leiden (found what is wrong) HOT 5
- Limitation on the number of cells? HOT 13
- Error installing package HOT 13
- extracting networks from R HOT 2
- Error updating package HOT 6
- Error while installing Leiden HOT 1
- Error in installing ‘leiden’ package HOT 2
- faulty r-reticulate conda environment HOT 10
- Multi_core/thread support HOT 2
- Error in r_to_py_impl(converted, convert = convert)
- install error, invalid pointer HOT 2
- RGL issue HOT 2
- install dependencies error
- Package installation segfault error on CentOS HOT 7
- Support attribute "consider_empty_community" of leidenalg.Optimiser HOT 1
- Installation errors HOT 2
- resolution parameter and number of iteration in leiden R package HOT 1
- Query about "NAs introduced by coercion to integer range" warning
- Leiden consistently unable to correctly identify installed dependencies
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