Comments (5)
As a work around you can install panads to the r-reticulate environment from command line with:
conda activate r-reticulate
conda install pandas
Then you should be able to install leiden.
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Yes actually I already fixed my issue, I wanted to share it as a bug to be fixed in the next releases
from leiden.
Thanks for reporting the issue. I'll try get it fixed in upcoming releases as you've suggested. The most recent version does have some changes that may caused this. The idea was to handle the installation on python modules (needed for Leiden, UMAP, and Seurat) if conda is available. Sorry if this caused trouble, it was intended to avoid this.
from leiden.
Thanks for reporting! This issue should be patched in the 0.3.7 release. An update is required soon to ensure compatibility with new CRAN requirements.
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leiden version 0.3.7 is on CRAN!
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Related Issues (20)
- Methods for additional Multiplex graph classes
- Limitation on the number of cells? HOT 13
- Error installing package HOT 13
- extracting networks from R HOT 2
- Reproducibility HOT 2
- Error updating package HOT 6
- Error while installing Leiden HOT 1
- Error in installing βleidenβ package HOT 2
- faulty r-reticulate conda environment HOT 10
- Multi_core/thread support HOT 2
- Error in r_to_py_impl(converted, convert = convert)
- install error, invalid pointer HOT 2
- RGL issue HOT 2
- install dependencies error
- Package installation segfault error on CentOS HOT 7
- Support attribute "consider_empty_community" of leidenalg.Optimiser HOT 1
- Installation errors HOT 2
- resolution parameter and number of iteration in leiden R package HOT 1
- Support maximum community size in Bipartite graphs
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