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pinetree

🌲 a flexible gene expression simulator with codon-specific translation rates

poly

Poly is a Go library and command line utility for engineering organisms.

practical_protein_science

A modern approach to the study of proteins

protqr

An attempt of generating something akin to QR codes for protein sequences

pybridize

Detect introgression events in genomes

python_molecular_evolution

Using python to learn aspects of molecular evolution

reciprofinder

An adorably naiive attempt to find one to one orthologs of N species using all against all blast search

reproducibilitytutorial

rnafusion

RNA-seq analysis pipeline for detection gene-fusions

scientificcomputing

Introductory course material for an introduction to UNIX and python for biologists

smrnaseq

A small-RNA sequencing analysis pipeline

spider_ick_evolution

Using spider genomes to elucidate the origin of ICK toxins

subpep

A method to generate peptide sequence subsets

summarizeannotatedgenome

A snakefile to summarize assemblies with a gff3 file, such as those found in Ensembl

tf_geotif

load geotif datafrom worldclim, use as input for tensorflow

tijeco.github.io

Personal projects

tijeco_blog

tijeco_website

tile-stitch

Stitch together and crop map tiles for a specified bounding box

toxify

deep learning approach to classify animal toxins

venom_codon_usage

Analysis of venom codon usage in venom genes

wanderingspiders

A suite of tools for ruining simulations to explore how venom toxicity evolves

wilkelab.github.io

wowchemy-hugo-modules

📝 The website builder for Hugo. Build and deploy a beautiful website in minutes!