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LOBICO

LOBICO in MATLAB, plot in R

What's it

  • A script used to convert the gene expression matrix into binary, hence to apply LOBICO to find the logic model
  • Without complex machine learning, you can get the simple logic model of genes to detect different cancers.
  • The LOBICO model will depends on CPLEX

How it works

  • Place expression matrix in ~/data, then finish binarization
  • Obtain the model using MATLAB & CPLEX in ~/Model; the parameters of model can be adjusted
  • Train the classification model, and get the results into the confusion table

lobico-matlab's People

Contributors

tianxiaonyu avatar

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