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codebase

Code depository for papers

complete-blood-cell-count-dataset

The complete blood count (CBC) dataset contains a total of 360 blood smear images of red blood cells (RBCs), white blood cells (WBCs), and Platelets with annotations.

computer-science-reference-books

"The question of whether a computer can think is no more interesting than the question of whether a submarine can swim." ― Edsger W. Dijkstra

cosmosid-cli

Command line client and Python libraries for CosmosID API

covid-19

Novel Coronavirus (COVID-19) Cases, provided by JHU CSSE

cudf

cuDF - GPU DataFrame Library

cytoscape-tutorials

Collection of modular Cytoscape tutorials for online presentation using reveal.js

data-analysis

Data Science Using Python

dataprep

DataPrep — The easiest way to prepare data in Python

datatable

A Python package for manipulating 2-dimensional tabular data structures

deep-learning-containers

AWS Deep Learning Containers (DLCs) are a set of Docker images for training and serving models in TensorFlow, TensorFlow 2, PyTorch, and MXNet.

deep-stuff

Dedicated to colab notebooks which will have resources and codes of deep learning based problem statements.

deeplabcut

Official implementation of DeepLabCut: Markerless pose estimation of user-defined features with deep learning for all animals incl. humans

deepmilo

deeppalm-trained-models

Three trained models for an emitter density of 4, 6 and 9 emitters / µm^2 to be supplied to the CNN architecture published by Nehme et al.

deepresearch

This repository is the collection of research papers in Deep learning, computer vision and NLP.

deepsim

Deep learning code semantic similarity

deepvariant

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

dge_workshop

dgidb

Rails frontend to The Genome Institute's drug gene interaction database.

doamusic

Python/C implementation of MUltiple SIgnal Classification as described by Schmidt.

docker-ubuntu-adam

(Genomics) Dockerfile for running Adam - http://bdgenomics.org

docker-ubuntu-avocado

(Genomics) Dockerfile for running Avocado - http://bdgenomics.org

dockerfiles

A collection of lightweight & performing containers.

ensembl-vep

The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants

essays-on-data-science

In which I put together my thoughts on the practice of data science.

ete

Python package for building, comparing, annotating, manipulating and visualising trees. It provides a comprehensive API and a collection of command line tools, including utilities to work with the NCBI taxonomy tree.

fdp-rv

fiji

A "batteries-included" distribution of ImageJ :battery:

fmri

This repository contains analysis of high dimensional, time series FMRI brain images to determine which region of brain is responsible for processing visualisation of sentence and pictures.