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adam

ADAM is a genomics analysis platform with specialized file formats built using Apache Avro, Apache Spark, and Apache Parquet. Apache 2 licensed.

alexeval

Evaluation software for single molecule FRET measurements with alternating laser excitation

anatomyofmatplotlib

Anatomy of Matplotlib -- tutorial developed for the SciPy conference

aptsources-cleanup

Detects and interactively deactivates duplicate Apt source entries and deletes sources list files without valid enabled source entries (as requested in https://askubuntu.com/a/762815/175814).

ar-cutpaste

Cut and paste your surroundings using AR

assemblage

Tools for working with second gen assemblies, fasta sequences, etc

assessment-attempts

Data processing using docker containers, kafka, spark, and hadoop

autoai

Python based open source AutoAI with training code generation

autoviz

Automatically Visualize any dataset, any size with a single line of code. Created by Ram Seshadri. Collaborators Welcome. Permission Granted upon Request.

avocado

A Variant Caller, Distributed. Apache 2 licensed.

aws-cli

Universal Command Line Interface for Amazon Web Services

bayesian_optimization

bccd_dataset

BCCD (Blood Cell Count and Detection) Dataset is a small-scale dataset for blood cells detection.

bids-examples

A set of BIDS compatible datasets with empty raw data files that can be used for writing lightweight software tests.

biobakery

bioBakery tools for meta'omic profiling

biocode

Bioinformatics code libraries and scripts

blobtools

Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets

bold5000

Official code release for BOLD5000 Release 2.0

books-3

bwa

Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)

cannoli

Distributed execution of bioinformatics tools on Apache Spark. Apache 2 licensed.

cdhit

Automatically exported from code.google.com/p/cdhit

cellprofiler

An open-source application for biological image analysis

chado

the GMOD database schema

chm13

The complete sequence of a human genome

chm13-issues

CHM13 human reference genome issue tracking

ckm-mirror

openEHR.org CKM mirror

cmapr

Tools for manipulating annotated data matrices

cobratoolbox

The COnstraint-Based Reconstruction and Analysis Toolbox. Documentation:

cocoapi

COCO API - Dataset @ http://cocodataset.org/