thoppe / amino_acid_reduced_alphabet Goto Github PK

CMFILVWYAGTSNQDEHRKP       483.3916 
CMFILVWY AGTSNQDEHRKP       75.8647
CMVWY FIL AGTSNQDEHRKP      41.3897
CMVWY FIL AGTHP SNQDERK     24.8116
CMVWY FIL AH GTSNQRP DEK    18.8571
CY MVW FIL AH GTSQRP NDE K  10.9412
CY MVW FIL AH GTP SNQR DE K  8.8100

CMVWY FIL AH GTSQRP NDEK 0.2897

[[ 4.969  5.973  3.739  3.159  2.654]
 [ 5.973  7.054  4.625  3.991  3.412]
 [ 3.739  4.625  2.647  2.122  1.783]
 [ 3.159  3.991  2.122  1.786  1.497]
 [ 2.654  3.412  1.782  1.497  1.357]]

[[ 4.969  5.973  3.473  2.812]
 [ 5.973  7.054  4.312  3.612]
 [ 3.473  4.312  2.214  1.706]
 [ 2.812  3.612  1.706  1.492]]

[[ 4.969  5.973  3.739  3.113  2.593]
 [ 5.973  7.054  4.625  3.932  3.357]
 [ 3.739  4.625  2.647  2.099  1.723]
 [ 3.113  3.932  2.099  1.758  1.440]
 [ 2.593  3.357  1.723  1.440  1.249]]

PAM_Koisol_2004
AGTSNQDEHRKP W YF MIVL C 
[[ 1.722  3.272  3.517  3.502  2.835]
 [ 3.272  5.060  5.410  5.660  4.950]
 [ 3.517  5.410  5.688  5.928  4.980]
 [ 3.502  5.660  5.928  6.221  5.320]
 [ 2.835  4.950  4.980  5.320  5.440]] 
65.1322997396

Chemical_prop
IVL FYWH KRDE GACS TMNQP 
[[ 6.508  5.442  3.182  4.302  4.097]
 [ 5.442  4.815  2.850  3.595  3.558]
 [ 3.182  2.850  1.443  1.689  1.754]
 [ 4.303  3.595  1.689  2.721  2.450]
 [ 4.097  3.558  1.754  2.450  2.411]] 
163.004959792

Li_2003
CFYW MLIV G PATS NHQEDRK 
[[ 5.294  5.709  3.430  3.504  3.139]
 [ 5.709  6.221  3.678  3.816  3.297]
 [ 3.430  3.678  2.240  2.020  1.604]
 [ 3.504  3.816  2.020  1.990  1.685]
 [ 3.139  3.297  1.604  1.685  1.651]] 
64.6189559357

WAG_Koisol_2004
AGTSNQDEHRKP CV IML FY W 
[[ 1.722  2.978  3.629  3.517  3.272]
 [ 2.978  5.220  5.695  5.218  5.060]
 [ 3.629  5.695  6.479  6.085  5.823]
 [ 3.517  5.218  6.085  5.688  5.410]
 [ 3.272  5.060  5.823  5.410  5.060]] 
61.9505122685

Wang_Wang_1999
CMIFLYWV AHT GP QNRSK DE 
[[ 5.733  3.921  3.588  3.178  2.947]
 [ 3.921  2.466  2.120  1.834  1.870]
 [ 3.587  2.120  1.933  1.559  1.350]
 [ 3.178  1.834  1.559  1.381  1.722]
 [ 2.947  1.870  1.350  1.722  1.040]] 
54.3794870699

Cieplak_2001
LFI MVWCY HA TGPRQSNED K 
[[ 7.054  5.973  4.625  3.816  3.247]
 [ 5.973  4.969  3.739  3.014  2.442]
 [ 4.625  3.739  2.647  2.059  1.330]
 [ 3.816  3.014  2.059  1.675  1.228]
 [ 3.247  2.442  1.330  1.228  0.120]] 
19.9558481388

Wang_Wang_2002
CMFI LVWY AGTS NQDE HPRK 
[[ 6.007  5.725  3.732  3.130  3.445]
 [ 5.725  5.475  3.554  3.069  3.430]
 [ 3.732  3.554  2.109  1.666  1.772]
 [ 3.130  3.069  1.666  1.434  1.772]
 [ 3.445  3.430  1.772  1.772  1.532]] 
66.2149421875