Visual Integration Tool for Exploration of Spatial Single-Cell Experiments

• Latest release demo
• Previous demos
• Previous releases on NPM

For more information, see the documentation.

The demo features data from several collaborators, with preprocessing done by vitessce-data.

Checkout the project, cd, and then:

$ npm install
$ npm start

The development server will refresh the browser as you edit the code.

• To run all the Travis checks: ./test.sh
• To run just the unit tests: npm run test:watch
• To generate documentation: npm run docz:dev

To build the current branch and push to S3, first confirm that you have installed the AWS CLI and are in the appropriate AWS account:

$ aws iam list-account-aliases --query 'AccountAliases[0]'
"gehlenborglab"

and then run this script:

$ ./push-demo.sh

This will build, push to S3, and finally open the demo deployment in your browser.

If you haven't already, push a fresh demo and do a last manual test of the deployment. If it looks good, copy it to vitessce.io:

$ ./copy-prod.sh https://{url returned by push-demo.sh}

We publish to the NPM registry by hand: Update the version number in package.json and run npm publish.

Finally, update the CHANGELOG.md to point to the new release on NPM.

• vitessce-grid: Wrapper for react-grid-layout
• vitessce-data: Scripts to generate sample data
• ome-tiff-tiler: Docker container to generate tiles from OME-TIFF

• July 2019 lab meeting: Intern progress reports and HuBMAP collaboration
• 2019 Harvard IT Summit
• Map 2019 lab meeting: Misc. tools
• April 2019 lab meeting: Software engineering