This project was bootstrapped with Create React App.

In the project directory, you can run:

Runs a clean install of all needed modules

Make sure that all needed modules are installed before running the app.
Runs the app and the server in the background.
Open http://localhost:3000 to view it in the browser.

Toy example with 38 taxa and 10 SNPs. The phylogenetic tree is a modified version of the one presented by Yokoyama et al (2008, Publication). The SNPs are based on the table of the Mycobacterim leprae by Schuenemann et al (2018, Publication). Hence, this example does not show any biological data, but it can still be used to get to know the GUI of Evidente.

Extract of the Toy Example with seven taxa. This example is used to initialize Evidente.

From Schuenemann et al (2018, Publication). The study analyzed over 169 taxa of different species around the globe and identified 3155 SNPs. It provides a metadata file with the location and date of extraction of the samples.

From Arora et al (2016, Publication). The study analyzed around 120 samples of different strains of the T. pallidum collected around the globe. It analyzed their antibiotic resistance and it was able to identified a correlation between the presence of SNP 235204 and a resistance to the antibiotic macrolide.

Contains a list of contents of the evidente2 repository including all files relevant during the extension of evidente2.0 together with a short description.