thexiyang Goto Github PK
Name: dongxy23
Type: User
dongxy23's Projects
ncbi-genome-download
Scripts to download genomes from the NCBI FTP servers
pangenomics
Scripts and utilities for pangenomic/phylogenomic analysis of prokaryotic genomes. Scripts for the analysis of genomic features such as C-ARSC, N-ARSC, and intergenic spacer lengths are also included.
pgap
NCBI Prokaryotic Genome Annotation Pipeline
phylogenomicsworkflow
A workflow to generate a phylogentic tree with your Genomes
prokka
:zap: :aquarius: Rapid prokaryotic genome annotation
refinem
A toolbox for improving metagenome-assembled genomes.
samsa2
SAMSA pipeline, version 2.0. An open-source metatranscriptomics pipeline for analyzing microbiome data, built around DIAMOND and customizable reference databases.
shovill
Faster SPAdes assembly of Illumina reads
singlem
De-novo OTUs from shotgun metagenomes
squeezemeta
A complete pipeline for metagenomic analysis
translate_fasta_headers
Translate long fasta headers to short - and back!
vamb
Variational autoencoder for metagenomic binning
virusdiscoveryproject
Software, architecture, and data index design for the 2018/2019 Virus Discovery Project
woltka
Web of Life Toolkit App
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