thekaplanlab / convart_pipeline Goto Github PK
View Code? Open in Web Editor NEWConVarT (The conserved clinical variation visualization tool) Pipeline
Home Page: http://www.convart.org
ConVarT (The conserved clinical variation visualization tool) Pipeline
Home Page: http://www.convart.org
The option to select different colour schemes in the web UI will be good to have and users can try and visualise instantly rather than changing in the code.
Update: Transferred correct repository under (thekaplanlab/msabrowser#5)
Possible bug in the create_alignments.py
.
Searching for exact sequence in convart_gene
table is slow since the DB has to perform exhaustive search to find the exact match. Given the fact that protein sequence length can be arbitrarily long, it is better to store a hash in the DB and query based on that indexed column. This way, protein sequence lookups will be much much faster.
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