Comments (5)
This is strange. I don't know why this happens. When I build locally it works (with some warnings). Not sure if warnings are treated as errors in this context but I don't think so.
from gggenomes.
It seems to be an issue with read_gff
. Same happens here https://thackl.github.io/gggenomes/reference/read_tracks.html. There are no warnings, though, from read_gff
on local builds. The read_paf
warnings are unrelated, I think.
Why read_gff
fails on CI build, I don't have a clue...
from gggenomes.
Okay, looking into it a bit more. Debugging GitHub actions is not straightforward. This looks promising but does not work because I get denied errors from rstudio cdn: https://github.com/nektos/act
This also might be an idea but is rather hacky: https://dev.to/retyui/how-debugging-github-actions-with-ssh-273n
So my suggestion would be to upgrade R
in the action from 4.0.0
to 4.0.4
to see if some bug that has since been fixed causes this error.
from gggenomes.
Sound like a good plan to me.
from gggenomes.
Actual problem is a bug in across()
dplyr-1.0.4 tidyverse/dplyr#5765. dplyr-1.0.4-dev works. Fixed dplyr-1.0.5 about to be released.
from gggenomes.
Related Issues (20)
- ! Required column(s) missing: • length HOT 2
- breaks to sequences with geom_break() HOT 1
- Error in read_feats HOT 4
- Draw a combined plot with ggtree and gggenomes HOT 3
- Error using continuous fill of geom_link() at same time as discrete fill of geom_gene() HOT 2
- Introducing sequence breaks? HOT 8
- shift example broken
- switch to R 4.1.2 and R pipe HOT 1
- Fix logo
- Remove thacklr dependency
- switch from size to linewidth for line geoms
- how to remove link borders? HOT 2
- Error in Installation HOT 4
- read_seqs() function not working for me HOT 8
- Unused parameter in drop_feat_layout HOT 2
- Operon boxes HOT 2
- Different genome scales 2
- Show y-axis for geom_wiggle() and offset geom_feat() HOT 1
- ggsave throws error in example code HOT 8
- Gff not recognized HOT 6
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from gggenomes.