Error in read_feats about gggenomes HOT 4 CLOSED

tl;dr I think I fixed the issue. You can try the fix immediately by installing via

devtools::install_github("thackl/gggenomes@fix-156")

I was able to reproduce this error in R version 4.3.1 (it did not occur in R version 4.1).
Relevant changes have been introduced in version 4.2.0 and 4.3.0 (see changelog)

• Calling && or || with either argument of length greater than one now gives a warning (which it is intended will become an error).

• Calling if() or while() with a condition of length greater than one gives an error rather than a warning. Consequently, environment variable R_CHECK_LENGTH_1_CONDITION no longer has any effect.
  and

• Calling && or || with LHS or (if evaluated) RHS of length greater than one is now always an error, with a report of the form

   'length = 4' in coercion to 'logical(1)'
  

  Environment variable R_CHECK_LENGTH_1_LOGIC2 no longer has any effect.

from gggenomes.

Installing the patch, restarting R, loading ggtree and then loading gggenomes worked. Thanks!

from gggenomes.

I encountered the same problem earlier today. I thought it was due to a poorly formatted file on my end. When I tried with a small viral GFF3 from NCBI, the problem persisted. And when I finally tried the example data, I got the same error as you.

I am hoping there is a quick answer to this.

from gggenomes.

Sorry for the late reply. Yes, this now works. Thanks for the quick fix!

from gggenomes.