Comments (1)
This is really strange. Unfortunately, when I build locally it looks just as broken as the online documentation. So I assume this has something to do with versions of some packages. This is the output of sessionInfo()
after running only library(gggenomes)
(current master):
R version 4.0.3 (2020-10-10)
Platform: x86_64-conda-linux-gnu (64-bit)
Running under: Ubuntu 18.04.5 LTS
Matrix products: default
BLAS/LAPACK: /home/jovyan/.conda/envs/gggenomes/lib/libopenblasp-r0.3.12.so
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
[5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
[7] LC_PAPER=en_US.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] gggenomes_0.0.0.9000 jsonlite_1.7.2 tibble_3.0.6
[4] thacklr_0.0.0.9000 stringr_1.4.0 readr_1.4.0
[7] purrr_0.3.4 gggenes_0.4.1 ggplot2_3.3.3
[10] dplyr_1.0.3
loaded via a namespace (and not attached):
[1] pillar_1.4.7 compiler_4.0.3 tools_4.0.3 ggfittext_0.9.1
[5] digest_0.6.27 evaluate_0.14 memoise_2.0.0 lifecycle_0.2.0
[9] gtable_0.3.0 pkgconfig_2.0.3 rlang_0.4.10 DBI_1.1.1
[13] rstudioapi_0.13 yaml_2.2.1 pkgdown_1.6.1 xfun_0.20
[17] fastmap_1.1.0 withr_2.4.1 knitr_1.31 hms_1.0.0
[21] desc_1.2.0 generics_0.1.0 fs_1.5.0 vctrs_0.3.6
[25] rprojroot_2.0.2 grid_4.0.3 tidyselect_1.1.0 glue_1.4.2
[29] R6_2.5.0 processx_3.4.5 rmarkdown_2.6 tidyr_1.1.2
[33] callr_3.5.1 magrittr_2.0.1 rematch2_2.1.2 scales_1.1.1
[37] ps_1.5.0 ellipsis_0.3.1 htmltools_0.5.1.1 assertthat_0.2.1
[41] colorspace_2.0-0 stringi_1.5.3 munsell_0.5.0 cachem_1.0.1
[45] crayon_1.4.0
from gggenomes.
Related Issues (20)
- Setting coordinates to visualise part of the genome HOT 1
- shitf() "unused argument" HOT 2
- geom_gene() doesn't work HOT 5
- Errors when running read_feats command HOT 3
- Change space between seqs within the same bin HOT 5
- Changing gene colours HOT 2
- ! Required column(s) missing: • length HOT 2
- breaks to sequences with geom_break() HOT 1
- Error in read_feats HOT 4
- Draw a combined plot with ggtree and gggenomes HOT 3
- Error using continuous fill of geom_link() at same time as discrete fill of geom_gene() HOT 2
- Introducing sequence breaks? HOT 8
- shift example broken
- switch to R 4.1.2 and R pipe HOT 1
- Fix logo
- Remove thacklr dependency
- switch from size to linewidth for line geoms
- how to remove link borders? HOT 2
- Error in Installation HOT 4
- read_seqs() function not working for me HOT 8
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from gggenomes.