Git Product home page Git Product logo

Comments (2)

thackl avatar thackl commented on June 24, 2024

I haven't directly implemented that in gggenomes, but you can use ggrepel to do it:

library(gggenomes)

s0 <- tibble(
  seq_id = "A",
  length = 5000
)

g0 <- tibble(
  seq_id = "A",
  start=c(1000, 1500, 1550),
  end=start+50,
  gene=c("fooo", "baaar", "baaaz")
)

gggenomes(g0, s0) +
  geom_seq() + geom_gene() +
  geom_gene_tag(aes(label=gene))

image

library(ggrepel)
gggenomes(g0, s0) +
  geom_seq() + geom_gene() +
  geom_text(aes(x=(x+xend)/2, y=y+.1, label=gene, color="overlapping"), data=genes(),
                  hjust=0, vjust=0, angle=45) +
  geom_text_repel(aes(x=(x+xend)/2, y=y+.2, label=gene, color="repelled"), data=genes(),
                  hjust=0, vjust=0, angle=45, direction = "x")

image

Check out https://ggrepel.slowkow.com/articles/examples.html#align-labels-on-the-top-or-bottom-edge-1 for additional ideas to draw lines between genes and tags, etc...

from gggenomes.

code-acc avatar code-acc commented on June 24, 2024

Thank you so much! Really helpful!

from gggenomes.

Related Issues (20)

Recommend Projects

  • React photo React

    A declarative, efficient, and flexible JavaScript library for building user interfaces.

  • Vue.js photo Vue.js

    🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.

  • Typescript photo Typescript

    TypeScript is a superset of JavaScript that compiles to clean JavaScript output.

  • TensorFlow photo TensorFlow

    An Open Source Machine Learning Framework for Everyone

  • Django photo Django

    The Web framework for perfectionists with deadlines.

  • D3 photo D3

    Bring data to life with SVG, Canvas and HTML. 📊📈🎉

Recommend Topics

  • javascript

    JavaScript (JS) is a lightweight interpreted programming language with first-class functions.

  • web

    Some thing interesting about web. New door for the world.

  • server

    A server is a program made to process requests and deliver data to clients.

  • Machine learning

    Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.

  • Game

    Some thing interesting about game, make everyone happy.

Recommend Org

  • Facebook photo Facebook

    We are working to build community through open source technology. NB: members must have two-factor auth.

  • Microsoft photo Microsoft

    Open source projects and samples from Microsoft.

  • Google photo Google

    Google ❤️ Open Source for everyone.

  • D3 photo D3

    Data-Driven Documents codes.