Comments (2)
Hi, not sure I fully understand - might be useful to post some of your code. In general, it is definitely possible to change the fill/color of links, for example:
gggenomes(emale_genes) %>% add_clusters(emale_cogs) +
geom_link(aes(fill=cluster_id))
Assuming you know that and tried something with add_clusters()
, one issue you might have come across is that the following doesn't work, i.e. metadata associated with clusters is not added to links. Then you would be quite right, that should work. I'll try to add that soon.
emale_cogs
gggenomes(emale_genes) %>% add_clusters(emale_cogs) +
geom_link(aes(fill=cluster_size))
### FAILS
A quick workaround could be to replace cluster_id
in your cluster data.frame with whatever labels you want to color your links by:
# just randomly assign for coloring example
emale_cogs2 <- emale_cogs %>%
mutate(cluster_id = sample(c("many", "single"), length(cluster_id), replace = T))
gggenomes(emale_genes) %>% add_clusters(emale_cogs2) +
geom_link(aes(fill=cluster_id))
from gggenomes.
Thank you very much!
from gggenomes.
Related Issues (20)
- Error in Installation HOT 4
- read_seqs() function not working for me HOT 9
- Unused parameter in drop_feat_layout HOT 2
- Operon boxes HOT 2
- Different genome scales 2
- Show y-axis for geom_wiggle() and offset geom_feat() HOT 1
- ggsave throws error in example code HOT 8
- Gff not recognized HOT 6
- Error in eval(`_inherit`, env, NULL): object 'Guides' not found. HOT 1
- Error in guides$setup(scales, aesthetics, default = params$guide_default %||% : attempt to apply non-function HOT 1
- unexpected error on example data HOT 1
- Incorrect labels for scale with large sequences HOT 1
- read_feats error HOT 4
- Multiple coverage tracks supported? HOT 4
- How can I change the distance (spacer) between different seqs? HOT 2
- Calculate coordinates from gff file with genes in different directions HOT 1
- Error when loading emales.fna with https://github.com/thackl/gggenomes/blob/HEAD/vignettes/emales.Rmd HOT 1
- Generate blast links with NCBI blast, easy to use row.names() HOT 1
- Changing start site of seq track and keeping layout. HOT 4
- markdown expressions in geom_gene_text HOT 1
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from gggenomes.