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Home Page: https://bioconductor.org/packages/gcapc
ChIP-seq peak calling with GC effects adjustment
Home Page: https://bioconductor.org/packages/gcapc
Hey
I am getting this error for a given chip-seq bam file. I have removed duplicates from bam file. I have tried
bdw <- bindWidth(cov, range=c(50L,300L), step=10L)
Starting to estimate bdwidth.
...... Cycle 1 for bind width estimation
Error in seq.default(range[1], range[2], step) :
'from' must be a finite number
Here is the summary of cov object
summary(cov)
Length Class Mode
fwd 194 SimpleRleList S4
rev 194 SimpleRleList S4
because it is hg38
Can you help me with this?
When installing I get this issue:
ERROR: this R is version 3.3.0, package 'gcapc' requires R >= 3.4
Error: Command failed (1)
It is interesting because at the moment there is no official R 3.4 release.
Cheers,
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