tarankalra1 / coawst_veg_deprecated- Goto Github PK

in veg_gls_corstep:

          tke_loc_veg=wku+wkv

should be
tke_loc_veg=SQRT(wku2+wkv2)

COAWST_VEG 🌱

This repository contains the version of COAWST accounting for vegetation:

Wave-flow-vegetation interaction model in ROMS/Nonlinear/Vegetation
Wave thrust on marsh face calculation routine in ROMS/Nonlinear/Vegetation
SAV growth model in ROMS/Nonlinear/Biology

C-preprocessing options in application header file (.h extension)

/* Turning on vegetation */

#define VEGETATION
#ifdef VEGETATION
# undef ANA_VEGETATION
# define VEG_DRAG
# ifdef VEG_DRAG
# define VEG_FLEX
# define VEG_TURB
# endif
# undef VEG_SWAN_COUPLING
# ifdef VEG_SWAN_COUPLING
# define VEG_STREAMING
# endif
#endif

/* Turning on wave thrust */

#define WAVE_THRUST_MARSH
#ifdef WAVE_THRUST_MARSH
# undef ANA_MARSH_MASK
#endif

/* Turning on SAV model */

#define ESTUARYBGC
#ifdef ESTUARYBGC
# define SPECTRAL_LIGHT
# define CARBON
# define OXYGEN
# define DENITRIFICATION
# define BIO_SEDIMENT
# define SAV_BIOMASS
# define ALGAL_RESP
# define DIAGNOSTICS_BIO
#endif

ANAlytical or NetCDF file for initial conditions

plant properties and distribution
marsh boundary

----------------Code Issues---------------------------------

1. rename spect_fennel to bio_estuary flag
2. The corresponding file to be changed from spect_fennel.h to estuarybgc.h, estuarybgc_var.h and so on...
3. Move Algal_Resp fixed variables to input file.

------------------Running issues---------------------------

1. Dinwcr not outputted in his file
2. WFH case showing issues at tiling

@alexisbeudin I don't we need ru_loc_veg as arrays in code

0: Subscript out of range for array hout (read_phypar.f90: 905)
subscript=0, lower bound=1, upper bound=1300, dimension=1
0: Subscript out of range for array hout (read_phypar.f90: 905)
subscript=0, lower bound=1, upper bound=1300, dimension=1
[nemo23:22691] [[40554,0],0]-[[40554,1],0] mca_oob_tcp_msg_recv: readv failed: Connection reset by peer (104)
[nemo23:22691] [[40554,0],0]-[[40554,1],1] mca_oob_tcp_msg_recv: readv failed: Connection reset by peer (104)
0: Subscript out of range for array hout (read_phypar.f90: 905)
subscript=0, lower bound=1, upper bound=1300, dimension=1
0: Subscript out of range for array hout (read_phypar.f90: 905)
subscript=0, lower bound=1, upper bound=1300, dimension=1
0: Subscript out of range for array hout (read_phypar.f90: 905)
subscript=0, lower bound=1, upper bound=1300, dimension=1
0: Subscript out of range for array hout (read_phypar.f90: 905)
subscript=0, lower bound=1, upper bound=1300, dimension=1
0: Subscript out of range for array hout (read_phypar.f90: 905)
subscript=0, lower bound=1, upper bound=1300, dimension=1
0: Subscript out of range for array hout (read_phypar.f90: 905)
subscript=0, lower bound=1, upper bound=1300, dimension=1
0: Subscript out of range for array hout (read_phypar.f90: 905)
subscript=0, lower bound=1, upper bound=1300, dimension=1

[nemo22:08804] [[40554,0],1]-[[40554,1],11] mca_oob_tcp_msg_recv: readv failed: Connection reset by peer (104)

mpirun has exited due to process rank 0 with PID 22692 on
node nemo23 exiting without calling "finalize". This may
have caused other processes in the application to be

terminated by signals sent by mpirun (as reported here).

0: Subscript out of range for array hout (read_phypar.f90: 905)
subscript=0, lower bound=1, upper bound=1300, dimension=1
~

/scylla-a/home/tkalra/VEG_v1/square_VEG/Build/libNLM_wec.a(wec_streaming.o): In function wec_streaming': /scylla-a/home/tkalra/VEG_v1/square_VEG/Build/wec_streaming.f90:62: undefined reference tovegetation_stream_mod_mp_vegetation_stream_cal_'

Switching on UV_Diagnostics makes the code crash

Hi. I am new at using COAWST and I wanted to run the veg_growth_test in the idealized domain. However, I encountered this error when I tried to do the ./coawst.bash. Would you know why I had this error? Thank you very much for your time.
`biology.f90:183:40:

  &                   OCEAN(ng) % EPB,                               &
                                    1

Error: ‘epb’ at (1) is not a member of the ‘t_ocean’ structure
biology.f90:1125:28:

         pmonth=2003.0_dp-1951.0_dp+yday/365.0_dp
                        1

Error: Missing kind-parameter at (1)
biology.f90:1124:36:

  CALL caldate (tdays(ng), yd_dp=yday)
                                1

Error: Keyword argument ‘yd_dp’ at (1) is not in the procedure
make: *** [ROMS/Nonlinear/Biology/Module.mk:15: /home/ayin_/COAWST/Projects/Veg_growth_test/Build/biology.o] Error 1`