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barboybercovich

Pipeline and analysis of CD8+ Tcells timed response to immunotherapy in mouse models

bissli2

Map Bisulfite Converted Reads

brocks_et_al_nat_com_2019_epitherapy_scrna

chameleon

Automatic colors for multi-dimensional data

cppd

PBAT capture probe designer package

daf.jl

Data in Axes in Formats

daf.py

Data in Axes in Formats

dnmt3ab_meeb

embexe

EXE development paper analysis code

embflow

gpatterns

gpwm

Motif analysis using the Misha package

hematopoiesis2018

iias2023

jupyter-shiny-proxy

Jupyter extension for proxying shiny server

labnorm

Normalize Laboratory Measurements by Age and Gender

li_et_al_cell_2018_melanoma_scrna

mars-seq

MARS-SEQ pipeline (scrna module from tlsrc)

mars_annotations

mcatac

Metacell analysis for ATAC data

mcbrowse

Metacells Browsing

mcgraphs.jl

Generate graphs for visualizing scRNA-seq metacells data in a Daf data set.

mcview

A shiny app for metacell analysis

meir_et_al_nat_gen_2020_clonemem

Luria-Delbruck design, comparing transcriptome, methylome and exome of single-cells to hundreds of single-cell-derived clones

meir_et_al_nat_plants_2021_smt

mendelson_et_al_2023

metabric_rrbs

metacell

Metacell - Single-cell mRNA Analysis

metacell.flow

Supporting inference of differentiation flow over metacell manifolds (and innovation of additional scRNA buzzwords)

metacells

Metacells - Single-cell RNA Sequencing Analysis