swotherspoon / sgat Goto Github PK

> devtools::install_github("SWotherspoon/SGAT")
Downloading GitHub repo SWotherspoon/SGAT@master
Installing 1 packages: coda
trying URL 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.6/coda_0.19-3.tgz'
Content type 'application/x-gzip' length 326688 bytes (319 KB)
==================================================
downloaded 319 KB


The downloaded binary packages are in
	/var/folders/9j/vv9dn52j4db83kq0mtky6tdm0000gn/T//RtmpgWbl5F/downloaded_packages
✔  checking for file ‘/private/var/folders/9j/vv9dn52j4db83kq0mtky6tdm0000gn/T/RtmpgWbl5F/remotes1c0b5c03315c/SWotherspoon-SGAT-952d6f4/DESCRIPTION’ ...
─  preparing ‘SGAT’:
✔  checking DESCRIPTION meta-information ...
─  checking for LF line-endings in source and make files and shell scripts
─  checking for empty or unneeded directories
─  looking to see if a ‘data/datalist’ file should be added
─  building ‘SGAT_0.1.3.tar.gz’
   
* installing *source* package ‘SGAT’ ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
sh: line 1:  7309 Segmentation fault: 11  R_TESTS= '/Library/Frameworks/R.framework/Resources/bin/R' --no-save --slave 2>&1 < '/var/folders/9j/vv9dn52j4db83kq0mtky6tdm0000gn/T//RtmpBlsWbe/file1c863b82c4f6'

 *** caught segfault ***
address 0x31, cause 'memory not mapped'

Traceback:
 1: Module(module, mustStart = TRUE, where = env)
 2: doTryCatch(return(expr), name, parentenv, handler)
 3: tryCatchOne(expr, names, parentenv, handlers[[1L]])
 4: tryCatchList(expr, classes, parentenv, handlers)
 5: tryCatch(Module(module, mustStart = TRUE, where = env), error = function(e) e)
 6: loadModule(module = "spmod", what = TRUE, env = ns, loadNow = TRUE)
 7: (function (ns) loadModule(module = "spmod", what = TRUE, env = ns, loadNow = TRUE))(<environment>)
 8: doTryCatch(return(expr), name, parentenv, handler)
 9: tryCatchOne(expr, names, parentenv, handlers[[1L]])
10: tryCatchList(expr, classes, parentenv, handlers)
11: tryCatch((function (ns) loadModule(module = "spmod", what = TRUE, env = ns, loadNow = TRUE))(<environment>),     error = function(e) e)
12: eval(substitute(tryCatch(FUN(WHERE), error = function(e) e),     list(FUN = f, WHERE = where)), where)
13: eval(substitute(tryCatch(FUN(WHERE), error = function(e) e),     list(FUN = f, WHERE = where)), where)
14: .doLoadActions(where, attach)
15: methods::cacheMetaData(ns, TRUE, ns)
16: loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
17: namespaceImport(ns, loadNamespace(i, c(lib.loc, .libPaths()),     versionCheck = vI[[i]]), from = package)
18: loadNamespace(package = package, lib.loc = lib.loc, keep.source = keep.source,     keep.parse.data = keep.parse.data, partial = TRUE)
19: withCallingHandlers(expr, packageStartupMessage = function(c) invokeRestart("muffleMessage"))
20: suppressPackageStartupMessages(loadNamespace(package = package,     lib.loc = lib.loc, keep.source = keep.source, keep.parse.data = keep.parse.data,     partial = TRUE))
21: code2LazyLoadDB(package, lib.loc = lib.loc, keep.source = keep.source,     keep.parse.data = keep.parse.data, compress = compress, set.install.dir = set.install.dir)
22: tools:::makeLazyLoading("SGAT", "/Library/Frameworks/R.framework/Versions/3.6/Resources/library/00LOCK-SGAT/00new",     keep.source = FALSE, keep.parse.data = FALSE, set.install.dir = "/Library/Frameworks/R.framework/Versions/3.6/Resources/library/SGAT")
An irrecoverable exception occurred. R is aborting now ...
ERROR: lazy loading failed for package ‘SGAT’
* removing ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library/SGAT’
Error: Failed to install 'SGAT' from GitHub:
  (converted from warning) installation of package ‘/var/folders/9j/vv9dn52j4db83kq0mtky6tdm0000gn/T//RtmpgWbl5F/file1c0b271600b8/SGAT_0.1.3.tar.gz’ had non-zero exit status

path <- thresholdPath(d.twl$Twilight, 
                      d.twl$Rise, 
                      zenith = zenith0, 
                      tol = 0, 
                      unfold = TRUE)

path$x[490:500,]
            lon         lat
 [1,] -238.3928  11.1458340
 [2,] -239.2741   5.0745154
 [3,] -239.9010  -6.0903358
 [4,] -239.3078 -17.9897554
 [5,] -239.0877 -16.6432785
 [6,] -238.8389  -0.0645753
 [7,] -238.5665   9.7964650
 [8,] -238.7752  10.2706688
 [9,] -238.8887   9.5461795
[10,] -239.1979   6.2832790
[11,] -239.2285  -0.1804215