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RamonaS's Projects

meta-analyses icon meta-analyses

Data and program code for meta-analyses of population health and health services research questions

meta-proteome-analyzer icon meta-proteome-analyzer

MetaProteomeAnalyzer (MPA) software for analyzing and visualizing MS-based metaproteomics data.

metagear icon metagear

metagear — Comprehensive Research Synthesis Tools for Systematic Reviews and Meta-Analysis.

microarray-analysis icon microarray-analysis

Materials on the analysis of microarray expression data; focus on re-analysis of public data ( http://tinyurl.com/cruk-microarray)

mop icon mop

Pipeline to integrate and process metagenomics, metatranscriptomics, and metaproteomics dataset

mosca icon mosca

Meta-Omics Software for Community Analysis

ms_fraction_merge icon ms_fraction_merge

Align and merge out-of-register fractionated mass spectrometry abundance profiles

named-entity-recognition icon named-entity-recognition

Notebooks for teaching Named Entity Recognition at the Cultural Heritage Data School, run by Cambridge Digital Humanities

openmee icon openmee

intuitive software for ecological and environmental meta-analysis

patpro icon patpro

Visualizing Temporal Microbiome Data

pcadb icon pcadb

PCaDB - a comprehensive and interactive database for transcriptomes from prostate cancer population cohorts

phylometa icon phylometa

phyloMeta is a program for phylogenetic comparative analyses with meta-analysis.

promoeu icon promoeu

platforma de colaborare trans-disciplinara

proteomics-pipelines icon proteomics-pipelines

A repo with a proteogenomics and metaproteomics pipeline developed by Matthys Potgieter.

proteostorm icon proteostorm

ProteoStorm: An Ultrafast Metaproteomics Database Search Framework

qiime icon qiime

Official QIIME 1 software repository. QIIME 2 (https://qiime2.org) has succeeded QIIME 1 as of January 2018.

recognizer icon recognizer

A tool for domain based annotation with databases from the Conserved Domains Database

seqmonk icon seqmonk

SeqMonk NGS visualisation and analysis tool

snakemake icon snakemake

This is the development home of the workflow management system Snakemake. For general information, see

superset icon superset

Apache Superset is a Data Visualization and Data Exploration Platform

unipept icon unipept

A Ruby on Rails application for proteomics data analysis

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