Name: RamonaS
Type: User
Company: University of Agricultural Sciences and Veterinary Medicine of Cluj-Napoca
Bio: nutri(genomics/transcriptomics/epigenetics/proteomics); microarray; datamining; proteomics; metaproteomics; integration omics data;functionalinteractomics
Twitter: suharoschi
Location: Cluj-Napoca, Romania
Blog: https://eeris.eu/ERIF-2000-000M-0499
RamonaS's Projects
Data and program code for meta-analyses of population health and health services research questions
MetaProteomeAnalyzer (MPA) software for analyzing and visualizing MS-based metaproteomics data.
metagear — Comprehensive Research Synthesis Tools for Systematic Reviews and Meta-Analysis.
Materials on the analysis of microarray expression data; focus on re-analysis of public data ( http://tinyurl.com/cruk-microarray)
microbiome R package
Pipeline to integrate and process metagenomics, metatranscriptomics, and metaproteomics dataset
Meta-Omics Software for Community Analysis
Align and merge out-of-register fractionated mass spectrometry abundance profiles
Notebooks for teaching Named Entity Recognition at the Cultural Heritage Data School, run by Cambridge Digital Humanities
Nucleome processing and analysis toolkit
intuitive software for ecological and environmental meta-analysis
Visualizing Temporal Microbiome Data
PCaDB - a comprehensive and interactive database for transcriptomes from prostate cancer population cohorts
phyloMeta is a program for phylogenetic comparative analyses with meta-analysis.
platforma de colaborare trans-disciplinara
A repo with a proteogenomics and metaproteomics pipeline developed by Matthys Potgieter.
ProteoStorm: An Ultrafast Metaproteomics Database Search Framework
Programming with Python
Python Programming Machine Learning Course
Official QIIME 1 software repository. QIIME 2 (https://qiime2.org) has succeeded QIIME 1 as of January 2018.
A tool for domain based annotation with databases from the Conserved Domains Database
SeqMonk NGS visualisation and analysis tool
This is the development home of the workflow management system Snakemake. For general information, see
Apache Superset is a Data Visualization and Data Exploration Platform
An agile dashboard for R
A Ruby on Rails application for proteomics data analysis
UniProt Id Mapping through API
Accompanying tutorial code for Deep Learning Workshops I ran for Hackers at Cambridge