Here's the list I have so far. The rule is, if both words are present, the second one is removed.
bite,byte
bites,byte
born,borne
boulder,bolder
breached,breeched
bread,bred
bridal,bridle
capital,capitol
ceiling,sealing
cell,sell
cells,sells
cents,scents
cents,sense
century,sentry
chair,chaire
chairs,chaires
chairs,cherres
chalk,chock
chased,caste
checks,cheques
citing,sighting
cocoa,coco
cot,caught
deer,dear
duel,dual
dues,dews
fairer,farer
fairs,fares
ferry,fairy
flew,flu
foul,fowl
fraught,frot
freeze,frees
freeze,frieze
gate,gait
gated,gaited
gourd,gored
gray,grey
hair,hare
handmade,handmaid
hanger,hangar
heart,hart
heel,heal
heels,heals
hertz,hurts
holy,wholly
hours,ours
idle,idol
illicit,elicit
inns,ins
jeans,genes
knot,not
knots,nots
leaky,leeky
lessons,lessens
maid,made
mantle,mantel
martial,marshal
maze,maise
maze,maize
meat,meet
meat,mete
meats,meets
meats,metes
metal,meddle
metals,meddles
mind,mined
morning,mourning
nose,knows
oar,ore
oars,ores
ordinance,ordnance
oriental,orientale
ought,aught
outcast,outcaste
overdue,overdo
oversight,overcite
packs,pacts
packs,pax
pedal,peddle
phrases,fraises
piece,peace
planes,plains
pole,poll
poles,polls
pray,prey
premiere,premier
principal,principle
profits,prophets
right,rite
right,wright
right,write
rights,rites
rights,wrights
rights,writes
rings,wrings
roll,role
rolling,rowling
rolls,roles
rooted,routed
rot,wrought
seams,seems
seams,semes
seeds,cedes
seeds,sedes
seeks,sikhs
seems,seams
sink,sync
sinks,syncs
socks,sox
soles,souls
sonny,sunny
soul,sole
souls,soles
sown,sone
speck,spec
steak,stake
steaks,stakes
steel,steal
stocking,stalking
story,storey
summary,summery
surely,shirley
tail,tale
tails,tales
teeming,teaming
therefore,therefor
threw,thru
throes,throws
throne,thrown
time,thyme
toad,toed
toad,towed
vane,vain
vane,vein
vascular,bascular
veil,vale
veils,vails
veils,vales
verses,versus
versus,verses
vial,vile
wave,waive
waved,waived
weak,week
weaker,weeker
wearing,waring
weather,whether
weekly,weakly
weight,wait
weighted,waited
weights,waits
whale,wail
whales,wails
whales,wales
wine,whine
wrapped,rapped
wrapped,rapt
wrapper,rapper
wrath,wroth
wrote,rote
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