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deeplab_v3's Introduction

DOI

DeepLab_V3 Image Semantic Segmentation Network

Implementation of the Semantic Segmentation DeepLab_V3 CNN as described at Rethinking Atrous Convolution for Semantic Image Segmentation.

For a complete documentation of this implementation, check out the blog post.

Dependencies

  • Python 3.x
  • Numpy
  • Tensorflow 1.10.1

Downloads

Evaluation

Pre-trained model.

Place the checkpoints folder inside ./tboard_logs. If the folder does not exist, create it.

Retraining

Original datasets used for training.

Place the tfrecords files inside ./dataset/tfrecords. Create the folder if it does not exist.

Training and Eval

Once you have the training and validation TfRefords files, just run the command bellow. Before running Deeplab_v3, the code will look for the proper ResNets checkpoints inside ./resnet/checkpoints, if the folder does not exist, it will first be downloaded.

python train.py --starting_learning_rate=0.00001 --batch_norm_decay=0.997 --crop_size=513 --gpu_id=0 --resnet_model=resnet_v2_50

Check out the train.py file for more input argument options. Each run produces a folder inside the tboard_logs directory (create it if not there).

To evaluate the model, run the test.py file passing to it the model_id parameter (the name of the folder created inside tboard_logs during training).

Note: Make sure the test.tfrecords is downloaded and placed inside ./dataset/tfrecords.

python test.py --model_id=16645

Retraining

To use a different dataset, you just need to modify the CreateTfRecord.ipynb notebook inside the dataset/ folder, to suit your needs.

Also, be aware that originally Deeplab_v3 performs random crops of size 513x513 on the input images. This crop_size parameter can be configured by changing the crop_size hyper-parameter in train.py.

Datasets

To create the dataset, first make sure you have the Pascal VOC 2012 and/or the Semantic Boundaries Dataset and Benchmark datasets downloaded.

Note: You do not need both datasets.

  • If you just want to test the code with one of the datasets (say the SBD), run the notebook normally, and it should work.

After, head to dataset/ and run the CreateTfRecord.ipynb notebook.

The custom_train.txt file contains the name of the images selected for training. This file is designed to use the Pascal VOC 2012 set as a TESTING set. Therefore, it doesn't contain any images from the VOC 2012 val dataset. For more info, see the Training section of Deeplab Image Semantic Segmentation Network.

Obs. You can skip that part and direct download the datasets used in this experiment - See the Downloads section

Serving

For full documentation on serving this Semantic Segmentation CNN, refer to How to deploy TensorFlow models to production using TF Serving.

All the serving scripts are placed inside: ./serving/.

To export the model and to perform client requests do the following:

  1. Create a python3 virtual environment and install the dependencies from the serving_requirements.txt file;

  2. Using the python3 env, run deeplab_saved_model.py. The exported model should reside into ./serving/model/;

  3. Create a python2 virtual environment and install the dependencies from the client_requirements.txt file;

  4. From the python2 env, run the deeplab_client.ipynb notebook;

Results

  • Pixel accuracy: ~91%
  • Mean Accuracy: ~82%
  • Mean Intersection over Union (mIoU): ~74%
  • Frequency weighed Intersection over Union: ~86

Results

deeplab_v3's People

Contributors

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deeplab_v3's Issues

A question about the inference

Thanks for great work.
I have a question about the inference.
In the original Deeplab_v3 paper, there are some comments about running inferences with Cityscapes dataset. They said "We adopt the same training protocol as before except that we employ 90K training iterations, crop size equal to 769, and running inference on the whole image, instead of on the overlapped regions as in [11]."
I found that running the codes in this repository produces the inference results with the cropped size(513x513). I want to know whether I could also run inference on the whole image, using the model trained on the cropped images.

last feature dimension size inconsistency

Last feature has size (32x32) and there is a convolution with kernel size 3 with dilation rate 18. So in order that the feature map would be valid one the feature size should be (2*18+3 =39). Is that correct?

Could add datasets download link in other free online drives?

Thanks for this great share!

When I attempt to download the datasets, it's in a drive called MEGA, and it sets many barriers to download this datasets.... after several hours, I'm waiting for the free quota during the download process.

Could you please consider to make a copy of datasets to google drive or other free online drives?

Thank you very much,
Xiao

tensor shape mismatch

hello , after creating the custom tfrecord file i tried to run train.py but it gives me the following errors

ResNet checkpoints file successfully found.
Tensoboard folder: ./tboard_logs\12028
2018-08-20 08:44:58.956467: I T:\src\github\tensorflow\tensorflow\core\platform\cpu_feature_guard.cc:141] Your CPU supports instructions that this TensorFlow binary was not compiled to use: AVX2
Model checkpoits for resnet_v2_50 restored!
Traceback (most recent call last):
  File "C:\python3.6\lib\site-packages\tensorflow\python\client\session.py", line 1322, in _do_call
    return fn(*args)
  File "C:\python3.6\lib\site-packages\tensorflow\python\client\session.py", line 1307, in _run_fn
    options, feed_dict, fetch_list, target_list, run_metadata)
  File "C:\python3.6\lib\site-packages\tensorflow\python\client\session.py", line 1409, in _call_tf_sessionrun
    run_metadata)
tensorflow.python.framework.errors_impl.InvalidArgumentError: Input to reshape is a tensor with 34799360 values, but the requested shape has 8699840
         [[Node: annotation_reshape = Reshape[T=DT_UINT8, Tshape=DT_INT32](DecodeRaw_1, annotation_reshape/shape)]]
         [[Node: IteratorGetNext = IteratorGetNext[_class=["loc:@map/TensorArrayUnstack/TensorArrayScatter/TensorArrayScatterV3"], output_shapes=[[?,900,900,3], [?,900,900], [?], [?]], output_types=[DT_FLOAT, DT_INT32, DT_INT32, DT_INT32], _device="/job:localhost/replica:0/task:0/device:CPU:0"](IteratorFromStringHandle)]]

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "train.py", line 190, in <module>
    handle: training_handle})
  File "C:\python3.6\lib\site-packages\tensorflow\python\client\session.py", line 900, in run
    run_metadata_ptr)
  File "C:\python3.6\lib\site-packages\tensorflow\python\client\session.py", line 1135, in _run
    feed_dict_tensor, options, run_metadata)
  File "C:\python3.6\lib\site-packages\tensorflow\python\client\session.py", line 1316, in _do_run
    run_metadata)
  File "C:\python3.6\lib\site-packages\tensorflow\python\client\session.py", line 1335, in _do_call
    raise type(e)(node_def, op, message)
tensorflow.python.framework.errors_impl.InvalidArgumentError: Input to reshape is a tensor with 34799360 values, but the requested shape has 8699840
         [[Node: annotation_reshape = Reshape[T=DT_UINT8, Tshape=DT_INT32](DecodeRaw_1, annotation_reshape/shape)]]
         [[Node: IteratorGetNext = IteratorGetNext[_class=["loc:@map/TensorArrayUnstack/TensorArrayScatter/TensorArrayScatterV3"], output_shapes=[[?,900,900,3], [?,900,900], [?], [?]], output_types=[DT_FLOAT, DT_INT32, DT_INT32, DT_INT32], _device="/job:localhost/replica:0/task:0/device:CPU:0"](IteratorFromStringHandle)]]```

OutOfRangeError (see above for traceback): End of sequence

tensorflow.python.framework.errors_impl.OutOfRangeError: End of sequence
[[Node: IteratorGetNext = IteratorGetNext_class=["loc:@map/TensorArrayUnstack/TensorArrayScatter/TensorArrayScatterV3"], output_shapes=[[?,456,456,3], [?,456,456], [?], [?]], output_types=[DT_FLOAT, DT_INT32, DT_INT32, DT_INT32], _device="/job:localhost/replica:0/task:0/device:CPU:0"]]

Caused by op 'IteratorGetNext', defined at:
File "train.py", line 95, in
batch_images_tf, batch_labels_tf, _ = iterator.get_next()
File "/usr/local/lib/python3.5/dist-packages/tensorflow/python/data/ops/iterator_ops.py", line 373, in get_next
name=name)), self._output_types,
File "/usr/local/lib/python3.5/dist-packages/tensorflow/python/ops/gen_dataset_ops.py", line 1745, in iterator_get_next
output_shapes=output_shapes, name=name)
File "/usr/local/lib/python3.5/dist-packages/tensorflow/python/framework/op_def_library.py", line 787, in _apply_op_helper
op_def=op_def)
File "/usr/local/lib/python3.5/dist-packages/tensorflow/python/framework/ops.py", line 3414, in create_op
op_def=op_def)
File "/usr/local/lib/python3.5/dist-packages/tensorflow/python/framework/ops.py", line 1740, in init
self._traceback = self._graph._extract_stack() # pylint: disable=protected-access

OutOfRangeError (see above for traceback): End of sequence
[[Node: IteratorGetNext = IteratorGetNext_class=["loc:@map/TensorArrayUnstack/TensorArrayScatter/TensorArrayScatterV3"], output_shapes=[[?,456,456,3], [?,456,456], [?], [?]], output_types=[DT_FLOAT, DT_INT32, DT_INT32, DT_INT32], _device="/job:localhost/replica:0/task:0/device:CPU:0"]]

NoneType error at CreateTfRecord

I'm editing CreateTfRecord file so I can use my own dataset. When I run the last 2 cells I have the following error message "TypeError: 'NoneType' object is not iterable". I uploaded a text file with the whole thing.
error.txt

the pre-trained resnet-50 or resnet-101 models

Hi there, i am student who is interested in this project,
I just want to know where to get the "the pre-trained resnet-50 or resnet-101 models"
The link given in the README leads to a paper, which means I should ask the author for the models?
Or is there a download link please?

Format of test.tfrecords

Should test.tfrecords be in the same format as train.tfrecords and validation.tfrecords? I was able to generate train and validation for a new data set and successfully train a model. However, when trying test.py, I have been getting reshaping errors like this one: ValueError: cannot reshape array of size 195453 into shape (381,795). Should test.tfrecords be created differently?

IterationG

tensorflow.python.framework.errors_impl.OutofRangeError: End of sequence

How to get start?

@sthalles Hi, thanks for your blog and codes.
I have some questions since I am a green hand. I followed the README.md and finished downloading the datasets. But I don't know how to go on with next work. Could you please tell me the next steps? I don't understand the steps in README.md very much.
Thank you!

Argument "resnet_model" missing in test.py

Hi and thanks for your well-written blog post and code!

I think I encountered a bug in the script for testing. Seems like the argument "resnet_model" is not available in test.py. I'm currently on TF 1.5 so it might be related to this, but as far as I can tell from a quick glance through the code I think it's just a missing argument.

Calling the script as described in the README using:

python test.py --model_id=16645

yields an error:

resnet = getattr(resnet_v2, args.resnet_model)
TypeError: getattr(): attribute name must be string

I was able to fix it by replacing all occurrences of args.resnet_model with "resnet_v2_50" (which is a horrible hack tbh), so I assume the argument is actually just missing in test.py atm.

Cheers
Lukas

Global Validation Avg Loss: nan

Global step: 100 Average train loss: 3.046896914243698 Global Validation Avg Loss: nan MIoU: 0.10376305785030127
Global step: 200 Average train loss: 2.418999447822571 Global Validation Avg Loss: nan MIoU: 0.04654880184680223

human body segmentation

This is not a issue,but a question,sorry to put it here.
I want to do human body segmentation on Android phones using the frontal camera,the picture from camera,its width/height is 9/16=0.5625,does the input image's width/height ratio influence the segmentation results?Or should I resize the image to width/height =1.0?And how much training image is need to get a good segmentation result?I am new to image segmentation,and now I can get only about 1k images,Thank you very much if you can help me!

shape mismatch

When I am trying to train, I get the following error:

2018-07-15 22:31:21.210544: W tensorflow/core/framework/op_kernel.cc:1192] Invalid argument: Input to reshape is a tensor with 750000 values, but the requested shape has 187500
[[Node: annotation_reshape = Reshape[T=DT_UINT8, Tshape=DT_INT32](DecodeRaw_1, annotation_reshape/shape)]]

This seems to be related to the shape in tfrecord file. I used the code provided in the repository to create those files. Should I update them?

mIOU

I used your pre-trained model on the test data, I got mIOU 70%, not 74%. Why?

Training Time for DeepLab v3

Nice work done. Just curious, how much time does it take to train the model? Some other models, such as Mask R-CNN, take more than one days to train on a 8-GPU machine using standard COCO dataset. I wonder if DeepLab has any advantages of training over other models, since I want to training it personally if the computation cost is not too expensive. Thank you.

couldn't train network on different dataset

I tried train the network on different dataset but it didn't work, every time I start the training it throw the following error

image

can you please help me to solve this issue ?

Regards

Retrain with checkpoints files

Thanks for great work.
I found that checkpoints files were written successfully. I used these files with test.py to load the saved model.
On the other hand, I want to know whether I could load the saved checkpoints files for retraining.

apply multi grid?

Hi, it seems that the code do not contain multi-grid part in it, or maybe I miss something..?
I'm confusing about which block should apply multi grid, in the paper. Block 4 ? or Block 4- 5,6,7..(deeper)?
Or, apply multi-grid to all ASPP parallel layers?

Many thanks!

use my own dataset and get loss=0.0

Hi,
Thanks for your open-source code of your project. I have few questions when I use my private data to train the model. My data only have person and background, the foreground of the ground-truth is 255, the background of the ground-truth is 0, and I modify number_of_classes=1, but when I use resnet_v2_50 to train or your 16645 model to finetune, I get Average train loss: 0.0 Global Validation Avg Loss: 0.0 MIoU: 1.0 when I begin.

How can I fix that?
Looking forward to your reply!

How to run your code?

Thanks for your working in Deeplab. Could you tell me how to prepare dataset and run your code? Thanks

Using your model to train on a different dataset

Hi

I am instantiating your model from the checkpoint that you have provided and I am looking to add some additional layers to the end.
I am using it in the following way:

path = os.path.join(model_path, model_name)
    saver = tf.train.import_meta_graph(path + '.meta')
    graph = tf.get_default_graph()
    trained_output = graph.get_tensor_by_name("cond/DeepLab_v3/logits/Conv2D:0")
    final_conv_layer = tf.layers.conv2d(trained_output, num_classes, 1,
                                        kernel_regularizer=tf.contrib.layers.l2_regularizer(0.001),
                                        kernel_initializer=tf.truncated_normal_initializer(mean=0, stddev=0.01),
                                        name='final_conv_layer')
    final_layer = tf.image.resize_bilinear(final_conv_layer, image_shape, name='final_layer')

When I print out all the tensors in the network, I see that you have two placeholders called Placeholder(line:15 in output1.txt) and Placeholder_1(line:38 in output1.txt).
Can you provide some info on what each of these placeholders needs as an input ?

The code that i used to look at the all the operation names is as follows:

with tf.Session() as sess:
    sess.run(tf.global_variables_initializer())
    saver.restore(sess, save_path="./models/model.ckpt")
    op = sess.graph.get_operations()
    op_list = [m.name for m in op]
    for operation in op_list:
        print(operation)

I am attaching the output1.txt file which contains the names of the tensors and the .py file I use to generate it (deeplab_test.txt).
Thanks for your help!
output1.txt
deeplab_test.txt

P.S - Thanks for the medium article. It was helpful in understanding how DeepLab works.

Which paper is this repo an implementation of?

Up till now 4 editions of DeepLabs papers have been released.
The blog post mentions the paper no. 1706.05587, while the repo Read-me mentions the previous edition numbered 1606.00915.
Which edition of DeepLab is the implementation in this repo based on?
I am aiming to train on my custom dataset and want to refer to the paper to get a better understanding of your implementation.

fine tuning

is it possible to fine tune the model on a custom dataset which might have different number of classes?

of course a pre-trained weights file must exist either

Re-train the network on a different dataset

I would like to train the network on a mine dataset, how do the masks have to be prepared?
I have RGB images where every pixel is:
[0,0,0] -> background
[1,1,1] -> dog
[2,2,2] -> cat

are they okay?

how to understand the GAP code?

image_level_features = tf.reduce_mean(net, [1, 2], name='image_level_global_pool', keep_dims=True)
image_level_features = slim.conv2d(image_level_features, depth, [1, 1], scope="image_level_conv_1x1",
activation_fn=None)
image_level_features = tf.image.resize_bilinear(image_level_features, (feature_map_size[1], feature_map_size[2]))
The dim of input tensor net is [ batch,height,width,deepth], so after resuce_mean it became to [batch,1,1,deepth], afetr 1X1 conv, it became to[batch,1,1,256], I want to know why it can to be[batch,heihgt,width,256] after resize?

Nan losses

Hi,

So basically I just launched your code using Tensorflow 1.7.0 on your data (I downloaded them from the media fire link), and I tried to retrain the network using the resnet v2 50 and I get NaN losses when testing... I figured it has something to do with the is_training placeholder:
-If set to False the output from the network (softmax, the "logits_tf" op (?)) is a 513x513x21 matrix filled with NaN values.
-if set to True it is okay.

I am training on a GTX 1080Ti, and I used the following command:

python train.py --starting_learning_rate=0.00001 --batch_norm_decay=0.997 --crop_size=513 --gpu_id=0 --resnet_model=resnet_v2_50

Do you know why it does that, feels like it's batchnorm related as always with tensorflow...
I also tried with tensorflow 1.8, it did not work.

Thanks in advance,

Antoine

Start test for separate images

Hello, it is possible to start test for separate images not for tfrecords file? I want to use with network for segmentation object on a video. I have a problem with tensorflow. How I need to edit test.py? Thank you for help.

something about voc groudtruth label

Hi sthalles, Thanks for your great work!

I get a little confusion about CreateTfRecord.ipynb.
In CreateTfRecord.ipynb, I found the two types of annotation are different.
1,
If "annotation_np = imread(os.path.join(annotations_dir_voc, image_name.strip() + ".png"))",
then the result label is :
annotation_np.dtype : uint8, annotation_np.shape: (w,h,4), np.max(annotation_np): 255, np.min(annotation_np)): 0.
2,
If "annotation_np = read_annotation_from_mat_file(annotations_dir_aug_voc, image_name)",
then the result label is :
annotation_np.dtype : uint8, annotation_np.shape: (w,h), np.max(annotation_np): 15, np.min(annotation_np)): 0.

What is the meaning of the annotation_np when its shape is (w,h,4)? If it will cause something wrong when train the model?

Failed to get matching files on ./resnet/checkpoints/resnet_v2_50.ckpt

Hi
When I run the train.py, there are errors

InvalidArgumentError (see above for traceback): Unsuccessful TensorSliceReader constructor: Failed to get matching files on ./resnet/checkpoints/resnet_v2_50.ckpt: Not found: FindFirstFile failed for: ./resnet/checkpoints : ϵͳ\udcd5Ҳ\udc

Where should I download the resnet_v2_50.ckpt file?

OutOfRangeError (see above for traceback): End of sequence IteratorGetNext = IteratorGetNext

I am trying to run this on my own custom dataset. I have followed the steps and created tfrecords. When I run the training after about ten minutes I get the following error:

 File "/home/ubuntu/anaconda3/envs/tensorflow_p36/lib/python3.6/site-packages/tensorflow/python/client/session.py", line 1135, in _run
    feed_dict_tensor, options, run_metadata)
  File "/home/ubuntu/anaconda3/envs/tensorflow_p36/lib/python3.6/site-packages/tensorflow/python/client/session.py", line 1316, in _do_run
    run_metadata)
  File "/home/ubuntu/anaconda3/envs/tensorflow_p36/lib/python3.6/site-packages/tensorflow/python/client/session.py", line 1335, in _do_call
    raise type(e)(node_def, op, message)
tensorflow.python.framework.errors_impl.OutOfRangeError: End of sequence
         [[Node: IteratorGetNext = IteratorGetNext[_class=["loc:@map/TensorArrayUnstack/TensorArrayScatter/TensorArrayScatterV3"], output_shapes=[[?,513,513,3], [?,513,513], [?], [?]], output_types=[DT_FLOAT, DT_INT32, DT_INT32, DT_INT32], _device="/job:localhost/replica:0/task:0/device:CPU:0"](IteratorFromStringHandle)]]

Caused by op 'IteratorGetNext', defined at:
  File "train.py", line 95, in <module>
    batch_images_tf, batch_labels_tf, _ = iterator.get_next()
  File "/home/ubuntu/anaconda3/envs/tensorflow_p36/lib/python3.6/site-packages/tensorflow/python/data/ops/iterator_ops.py", line 370, in get_next
    name=name)), self._output_types,
  File "/home/ubuntu/anaconda3/envs/tensorflow_p36/lib/python3.6/site-packages/tensorflow/python/ops/gen_dataset_ops.py", line 1466, in iterator_get_next
    output_shapes=output_shapes, name=name)
  File "/home/ubuntu/anaconda3/envs/tensorflow_p36/lib/python3.6/site-packages/tensorflow/python/framework/op_def_library.py", line 787, in _apply_op_helper
    op_def=op_def)
  File "/home/ubuntu/anaconda3/envs/tensorflow_p36/lib/python3.6/site-packages/tensorflow/python/framework/ops.py", line 3392, in create_op
    op_def=op_def)
  File "/home/ubuntu/anaconda3/envs/tensorflow_p36/lib/python3.6/site-packages/tensorflow/python/framework/ops.py", line 1718, in __init__
    self._traceback = self._graph._extract_stack()  # pylint: disable=protected-access

OutOfRangeError (see above for traceback): End of sequence
         [[Node: IteratorGetNext = IteratorGetNext[_class=["loc:@map/TensorArrayUnstack/TensorArrayScatter/TensorArrayScatterV3"], output_shapes=[[?,513,513,3], [?,513,513], [?], [?]], output_types=[DT_FLOAT, DT_INT32, DT_INT32, DT_INT32], _device="/job:localhost/replica:0/task:0/device:CPU:0"](IteratorFromStringHandle)]]

Any idea what would cause this?

Thanks

No module named 'grpc'

when running the deeplab_client.ipynb notebook, i got No module named 'grpc'.
`ModuleNotFoundError Traceback (most recent call last)
in ()
1 from future import print_function
2 from PIL import Image
----> 3 from grpc.beta import implementations
4 import tensorflow as tf
5 import matplotlib.pyplot as plt

ModuleNotFoundError: No module named 'grpc'install both$ python -m pip install grpcio
$ python -m pip install grpcio-tools`
but the problem remains.

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