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Name: Statens Serum Institut
Type: Organization
Location: Denmark
Blog: https://www.ssi.dk/
Name: Statens Serum Institut
Type: Organization
Location: Denmark
Blog: https://www.ssi.dk/
Bifrost Component: Min Read Check - Checks that provided read files have a minimum number of reads for analysis
Component for running seqsero in Bifrost
Bifrost Component: SSI Stamper - Runs SSI's QC check on samples using metrics generated from Assemblatron, Min Read Check and Whats my species
Bifrost Component: Whats My Species - Checks species of sample and whether it's correct or not against a kraken DB
REST API for triggering bioinformatic calculations from SOFI
Bash scripts to run virulencefinder and serotypefinder in local settings on ecoli fasta and fastq.gz files.
Tool to find mge (phages, plasmids, and transposons) in cdiff. Scripts that allow Clostyper to be run in slurm.
Ecoli species specific scripts in nbdev2 format.
Preliminary work of CC398 global phylogeny
Scripts and documentation for Bruker software
Notebook showing how to create fake data for our typical case-control studies.
This repository contains teaching material for the 3rd International Summer School on Non-Targeted Metabolomics Data Mining for Biomedical Research
Python package to create multi-well plate layouts for specimen sample data. Automatically distributes quality control samples according to scheme in config file.
Run CGE pointfinder in kma mode
Proof of concept implementation for indexed similarity search of a cgMLST profile against a database.
Simple prototype script for integration of chewieSnake in Bifrost.
Cleans putative recombination events from a SNP matrix
Dash component to add custom button to scroll to the top of the page.
R package that provides a feature store tailored towards disease modelling
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Open source projects and samples from Microsoft.
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Data-Driven Documents codes.
China tencent open source team.