ssi-dk Goto Github PK

ad_staphylome_project

aeddo

Automated and Early Detection of Disease Outbreaks

aedseo

Automated and Early Detection of Seasonal Epidemic Onset

aef-ddf

aef-ddf-diseasystorefhm

Extends diseasystore with Swedish data from Folkhälsomyndigheten

aef-ddf-flu-forecast-hub

European Influenza forecasting hub

ansible-conda-env

ansible-grafana-podman

Ansible role for installing and configuring Grafana to run in container.

ansible-miniconda

ansible-podman-container-systemd

creates systemd files and creates containers using podman

ansible-prometheus-podman

Ansible role for installing and configuring Prometheus to run in container.

beone-dashboard

Dashboard developed in React for reading data in BeONE JSON format.

beone-datahub

Core web application for the BeONE project.

beone-old-version

The BeONE project repo

bifrost

bifrost-archive

Bacterial Surveillance platform, focused on QC in Denmark

bifrost-assembly_qc_type

bifrost-qcquickie

Fast assembly

bifrost_amrfinderplus

bifrost_ariba_mlst

Bifrost Component: Ariba MLST - Runs MLST against paired reads using ARIBA

bifrost_ariba_plasmidfinder

Bifrost Component: Ariba PlasmidFinder - Runs Ariba against PlasmidFinder DB using paired reads.

bifrost_ariba_resfinder

Bifrost Component: Ariba Resfinder - Runs Ariba on resfinder DB using paired reads

bifrost_ariba_virulencefinder

Bifrost Component: Ariba Virulencefinder - Runs Ariba on virulencefinder DB against paired reads.

bifrost_assemblatron

Bifrost Component: Assemblatron - De-novo assembly of paired reads for QC and downstream Analysis purposes

bifrost_cge_mlst

Bifrost Component: CGE MLST - Runs kma on a mlst DB using paired reads

bifrost_cge_resfinder

Bifrost Component: CGE Resfinder - Runs kma on resfinder DB using paired reads

bifrost_cge_virulencefinder

bifrost_chewbbaca

bifrostapi

Contains the python library for connecting with the bifrost database. Used by bifrost and beone dashboards.

bifrostlib

Python API for bifrost