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istar's Introduction

istar

istar is a software-as-a-service platform for bioinformatics and chemoinformatics.

Architecture

istar architecture

Components

Web client

Web server

Database

Workstations and daemons

  • Intel Xeon E5620 @ 2.40 GHz, 8GB DDR3 SDRAM, Fedora 20 x86_64, idock daemon
  • Intel Xeon E5620 @ 2.40 GHz, 8GB DDR3 SDRAM, Fedora 20 x86_64, idock daemon
  • Intel Xeon W3520 @ 2.66 GHz, 8GB DDR3 SDRAM, NVIDIA GeForce GTX 285 (1024 MB), Fedora 20 x86_64, igrep daemon

Supported browsers

  • Google Chrome 30
  • Mozilla Firefox 25
  • Microsoft Internet Explorer 11
  • Apple Safari 6.1
  • Opera 17

REST API for idock

Submit a new job via HTTP POST

curl -d $'receptor=
ATOM      1  N   PRO A  19     148.930 114.148   5.178  1.00138.31           N  \n
ATOM      2  CA  PRO A  19     149.869 115.263   5.360  1.00138.99           C  \n
TER    2743      GLN A 313                                                      \n
&center_x=150&center_y=109&center_z=22&size_x=18&size_y=17&size_z=15
&description=4MBS&[email protected]
&mwt_lb=400&mwt_ub=420&lgp_lb=0&lgp_ub=2&nrb_lb=4&nrb_ub=6
&hbd_lb=2&hbd_ub=4&hba_lb=4&hba_ub=6&chg_lb=0&chg_ub=0
&ads_lb=0&ads_ub=5&pds_lb=-20&pds_ub=0&psa_lb=60&psa_ub=80'
http://istar.cse.cuhk.edu.hk/idock/jobs

Obtain existing jobs via HTTP GET

curl http://istar.cse.cuhk.edu.hk/idock/jobs

Count the number of ligands satisfying your custom filtering conditions via HTTP GET

curl -Gd
'mwt_lb=400&mwt_ub=500&lgp_lb=0&lgp_ub=5&nrb_lb=2&nrb_ub=8&
hbd_lb=2&hbd_ub=5&hba_lb=2&hba_ub=10&chg_lb=0&chg_ub=0&
ads_lb=0&ads_ub=12&pds_lb=-50&pds_ub=0&psa_lb=20&psa_ub=100'
http://istar.cse.cuhk.edu.hk/idock/ligands

REST API for igrep

Submit a new job via HTTP POST

curl -d $'[email protected]&taxid=9606&queries=CTGCATGGTGGGGAAAAGGCATAGCCTGGG3
AAAAGTGTTATGGGTTGTTTAATCAACCACTGAACTGCGGGGGTGACTAGTTATAACTTA6'
http://istar.cse.cuhk.edu.hk/igrep/jobs

Obtain existing jobs via HTTP GET

curl http://istar.cse.cuhk.edu.hk/igrep/jobs

Licenses

Author

Jacky Lee

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Forkers

popfido cxhernandez glchriste hytyixin123 xblwyc surajkumar12 quinonez zhangjingrong lianyi martbert songminghu2004 qizhong19920114 gaoktp bluerider gaiyangjun seokjongyu gkxiao minghao2016 chwe17 sdwfrost indieinfluencers churloh rnaimehaom

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