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GT-FHIR2: Georgia Tech - OmopOnFHIR Implementation version 2

  • Supports OMOP v5
  • Supports STU3

Database Dependencies

This application requires an OMOP V5 database to work. You can use the database here: https://github.com/gt-health/smart-platform-docker/tree/hdap-devops/smart-postgresql

  1. First clone the hdap-devops branch of the smart-platform-docker project
  2. Navigate to the smart-postgres directory of the project.
      cd smart-postgres
    
  3. Look at the docker-compose.yml file and adjust configurations as needed. By default the database is configured to run on port 5438. Use docker-compose to start the container.
    sudo docker-compose up --build -d
    
  4. The OMOP V5 database is not running in a container.

How to install and run.

Docker Compose is used to create a container to run the GT-FHIR2 application. Before running the application update the values of the JDBC_URL, JDBC_USERNAME, and JDBC_PASSWORD environment variables in the Dockerfile They must contain the data necessary for your application to connect to an OMOP V5 database. After updating the ENV variables in the Dockerfile start the application

sudo docker-compose up --build -d

Application URLs

UI - http://<my_host>:8080/gt-fhir/tester/ API - http://<my_host>:8080/gt-fhir/fhir

Additional Information

Status: work-in-progress

Patient:

  • Write a single patient
  • Search without and with parameter: (by family name) adding more

Organization:

  • Basic read.

Please contact [email protected] if you want to participate in developing OmopOnFHIR for STU3.

gt-fhir2's People

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