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5xfire_2021

All scripts for the 5xFADFIRE mouse

abacus-engine

A lightweight OpenGL engine that lets you get up and running faster

computer-vision

Scripts and jupyter notebooks associated with CSE152

hdwgcna

High dimensional weighted gene co-expression network analysis

hdwgcna_paper

Code used to run the data analysis in the hdWGCNA manuscript (Morabito et al 2022)

kessenbrock_rotation

lanelab_shinyapps

old-site

A beautiful, simple, clean, and responsive Jekyll theme for academics

screm

Stochastic bioChemical REaction network simulations using continuous Markov processes (SCREM)

smorabit

GitHub profile repository

smorabit.github.io

spotify_analyst

Some kinda web / python / spotify deal

sus-picasso

t2dream-portal

The T2DREAM project collects and provides data on the human genome and epigenome to facilitate genetic studies of type 2 diabetes and its complications. The resource is based on software developed by the ENCODE DCC at Stanford University.

uci-statnlp

Code for the StatNLP course homework.

variant-viz

Embedded Dash app for visualizing relationships between variants, tissues, and functional annotations.

vc_tool

Semi supervised learning framework for predicting genetic variants using epigenome features

wgcna

Consensus WGCNA and post-analysis between RNA-seq gene expression data in humans from MAYO clinic, Mt. Sinai, and ROSMAP datasets.

winter_2019

Code and scripts for my courses during winter 2019 quarter.