galaxy stable with an empty dev toolshed enabled
typical use:
docker run -d -p 8080:80 -p 9009:9009 -v /host/dir:/export smithcr/galaxy-stable-toolshed
log into the toolshed as an administrator with:
email: [email protected]
pass: toolshed
galaxy stable with an empty dev toolshed enabled
galaxy stable with an empty dev toolshed enabled
typical use:
docker run -d -p 8080:80 -p 9009:9009 -v /host/dir:/export smithcr/galaxy-stable-toolshed
log into the toolshed as an administrator with:
email: [email protected]
pass: toolshed
When I start a container with this image, galaxy starts fine but the toolshed is not available. Looking in /var/log/supervisor/supervisord.log I see:
2016-04-04 15:08:29,677 INFO spawnerr: can't find command '/home/galaxy/venv/bin/python'
2016-04-04 15:08:29,678 INFO gave up: toolshed entered FATAL state, too many start retries too quickly
Python doesn't exist at /home/galaxy/venv/bin/python but when I tried to change it to /usr/bin/python in /etc/supervisor/conf.d/galaxy.conf then I get a missing python package error. If I change the whole toolshed command to be /galaxy-central/run_tool_shed.sh it then starts OK but I am not sure if this is correct for the way the container was setup.
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