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License: GNU General Public License v3.0
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get_remote_file with ftp credentials?
Hello there,
great package, especially the ftp part.
I saw that the download_ftp_file function gets deprecated.
I tried the get_remote_file function with a combined URL (including the credentials). This way I do not get a connection to FTP with the error message below.
1: In download.file(url = file_remote, destfile = file_local, quiet = !verbose, :
InternetOpenUrl failed: 'The server name or address could not be resolved
Do you have any other way for that?
thanks and br
christoph
Package not available for R version 4.1: package 'threadr' is not available for this version of R
Error in str_replace(., "\\..$", "") :
could not find function "str_replace"
Calls: <Anonymous> ... tbl_vars_dispatch -> rename_at -> vars_select_syms -> set_names -> .fn
In addition: Warning messages:
1: package 'threadr' is not available for this version of R
Error in loadNamespace(x) : there is no package called ‘threadr’
I got this error after trying to install the threadr package. Any developmental versions of the package I could install instead?
For your info:
> sessionInfo()
R version 4.1.1 (2021-08-10)
Platform: x86_64-apple-darwin17.0 (64-bit)
Running under: macOS Big Sur 11.4
Matrix products: default
LAPACK: /Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libRlapack.dylib
locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
attached base packages:
[1] stats graphics grDevices utils datasets methods
[7] base
other attached packages:
[1] stringr_1.4.0 ERAg_0.0.1.0000 ranger_0.13.1
[4] spatialsample_0.1.0 visdat_0.5.3 vip_0.3.2
[7] finetune_0.1.0 stacks_0.2.1 yardstick_0.0.8
[10] workflowsets_0.1.0 workflows_0.2.3 tune_0.1.6
[13] tidyr_1.1.3 tibble_3.1.4 rsample_0.1.0
[16] recipes_0.1.16 purrr_0.3.4 parsnip_0.1.7
[19] modeldata_0.1.1 infer_1.0.0 dplyr_1.0.7
[22] dials_0.0.9 scales_1.1.1 broom_0.7.9
[25] tidymodels_0.1.3 Boruta_7.0.0 patchwork_1.1.1
[28] superheat_0.1.0 gstat_2.0-7 DataExplorer_0.8.2
[31] ggfortify_0.4.12 ggbeeswarm_0.6.0 rcompanion_2.4.1
[34] report_0.3.5 ggridges_0.5.3 GGally_2.1.2
[37] corrr_0.4.3 ruler_0.2.4 RColorBrewer_1.1-2
[40] see_0.6.7 hablar_0.3.0 skimr_2.1.3
[43] dotwhisker_0.7.3 ggplot2_3.3.5 broom.mixed_0.2.7
[46] readr_2.0.1 pillar_1.6.2 treemap_2.4-3
[49] lme4_1.1-27.1 Matrix_1.3-4 ggExtra_0.9
[52] DT_0.18 kableExtra_1.3.4 data.table_1.14.0
[55] knitr_1.33 pacman_0.5.1 cowplot_1.1.1
[58] here_1.0.1
loaded via a namespace (and not attached):
[1] spam_2.7-0 coin_1.4-1 nortest_1.0-4
[4] remotes_2.4.0 lattice_0.20-44 spatstat.utils_2.2-0
[7] expm_0.999-6 vctrs_0.3.8 stats4_4.1.1
[10] utf8_1.2.2 withr_2.4.2 foreign_0.8-81
[13] lhs_1.1.1 lifecycle_1.0.0 matrixStats_0.60.1
[16] rgeos_0.5-5 munsell_0.5.0 codetools_0.2-18
[19] lmtest_0.9-38 furrr_0.2.3 magick_2.7.3
[22] parallelly_1.27.0 fs_1.5.0 stringi_1.7.3
[25] grid_4.1.1 polyclip_1.10-0 sandwich_3.0-1
[28] cluster_2.1.2 pkgconfig_2.0.3 prettyunits_1.1.1
[31] lubridate_1.7.10 httr_1.4.2 GPfit_1.0-8
[34] igraph_1.2.6 circular_0.4-93 modeltools_0.2-23
[37] haven_2.4.3 parameters_0.14.0 htmltools_0.5.2
[40] miniUI_0.1.1.1 viridisLite_0.4.0 usethis_2.0.1
[43] yaml_2.2.1 prodlim_2019.11.13 hexbin_1.28.2
[46] jquerylib_0.1.4 later_1.3.0 glue_1.4.2
[49] DBI_1.1.1 plyr_1.8.6 foreach_1.5.1
[52] dotCall64_1.0-1 gtable_0.3.0 latticeExtra_0.6-29
[55] fastmap_1.1.0 checkmate_2.0.0 promises_1.2.0.1
[58] webshot_0.5.2 FNN_1.1.3 distill_1.2
[61] hms_1.1.0 png_0.1-7 DescTools_0.99.42
[64] Formula_1.2-4 crayon_1.4.1 downlit_0.2.1
[67] gridBase_0.4-7 svglite_2.0.0 boot_1.3-28
[70] tidyselect_1.1.1 xfun_0.25 performance_0.7.3
[73] splines_4.1.1 spacetime_1.2-5 survival_3.2-13
[76] rootSolve_1.8.2.2 networkD3_0.4 jpeg_0.1-9
[79] fields_12.5 ggsignif_0.6.2 htmlTable_2.2.1
[82] xtable_1.8-4 cachem_1.0.6 ipred_0.9-11
[85] systemfonts_1.0.2 mime_0.11 gld_2.6.2
[88] processx_3.5.2 insight_0.14.3 numDeriv_2016.8-1.1
[91] tools_4.1.1 cli_3.0.1 magrittr_2.0.1
[94] proxy_0.4-26 rworldxtra_1.01 libcoin_1.0-8
[97] ggstance_0.3.5 repr_1.1.3 lmerTest_3.1-3
[100] s2_1.0.6 effectsize_0.4.5 multcomp_1.4-17
[103] zip_2.2.0 bayestestR_0.10.5 devtools_2.4.2
[106] tzdb_0.1.2 ps_1.6.0 lmom_2.8
[109] maptools_1.1-1 fansi_0.5.0 xts_0.12.1
[112] TH.data_1.0-10 KernSmooth_2.23-20 backports_1.2.1
[115] farver_2.1.0 openxlsx_4.2.4 shiny_1.6.0
[118] hardhat_0.1.6 sass_0.4.0 maps_3.3.0
[121] rsconnect_0.8.24 pROC_1.17.0.1 viridis_0.6.1
[124] rstudioapi_0.13 minqa_1.2.4 iterators_1.0.13
[127] spatstat.geom_2.2-2 intervals_0.15.2 nlme_3.1-152
[130] beeswarm_0.4.0 bslib_0.2.5.1 sf_1.0-2
[133] listenv_0.8.0 generics_0.1.0 colorspace_2.0-2
[136] base64enc_0.1-3 pkgbuild_1.2.0 e1071_1.7-8
[139] spatstat.data_2.1-0 sp_1.4-5 timeDate_3043.102
[142] evaluate_0.14 memoise_2.0.0 coda_0.19-4
[145] vipor_0.4.5 httpuv_1.6.2 class_7.3-19
[148] Rcpp_1.0.7 BiocManager_1.30.16 classInt_0.4-3
[151] pkgload_1.2.1 jsonlite_1.7.2 Hmisc_4.5-0
[154] digest_0.6.27 rprojroot_2.0.2 rmarkdown_2.10
[157] butcher_0.1.5 globals_0.14.0 compiler_4.1.1
[160] nnet_7.3-16 zoo_1.8-9 testthat_3.0.4
[163] keyholder_0.1.5 rlang_0.4.11 nloptr_1.2.2.2
[166] wk_0.5.0 sessioninfo_1.1.1 lava_1.6.9
[169] multcompView_0.1-8 rvest_1.0.1 future_1.22.1
[172] mvtnorm_1.1-2 htmlwidgets_1.5.3 labeling_0.4.2
[175] forcats_0.5.1 callr_3.7.0 datawizard_0.2.0
[178] curl_4.3.2 parallel_4.1.1 rworldmap_1.3-6
[181] highr_0.9 desc_1.3.0 deldir_0.2-10
[184] gridExtra_2.3 Exact_2.1 diagis_0.1.5
[187] DiceDesign_1.9 MASS_7.3-54 ellipsis_0.3.2
[190] xml2_1.3.2 gower_0.2.2 reshape_0.8.8
[193] rpart_4.1-15 R6_2.5.1 units_0.7-2
Error: Failed to install 'threadr' from GitHub: 'local_makevars' is not an exported object from 'namespace:withr'
Hello,
I keep getting this error while trying to install the thread package using the below code
install.packages("remotes") remotes::install_github("skgrange/threadr")
Error: Failed to install 'threadr' from GitHub: 'local_makevars' is not an exported object from 'namespace:withr'
Could someone please help?
When aggregating wind, do not error when negative directions are detected
When aggregating wind with aggregate_by_date, do not error when negative directions are detected. A better option would be to omit negative values, warn the user, and continue with the aggregation.
Error in i.p(...) : (converted from warning) installation of package
Issue installing package
There is an issue installing the latest version of the package.
> devtools::install_github("skgrange/threadr", dependencies = c("Depends", "Imports"))
Downloading GitHub repo skgrange/threadr@master
✔ checking for file ‘/tmp/Rtmp6SKBdU/remotes5d03bb59d13/skgrange-threadr-9ff43f3/DESCRIPTION’ ...
─ preparing ‘threadr’:
✔ checking DESCRIPTION meta-information ...
─ checking for LF line-endings in source and make files and shell scripts
─ checking for empty or unneeded directories
─ building ‘threadr_0.9.002.tar.gz’
Installing package into ‘/usr/local/lib/R/site-library’
(as ‘lib’ is unspecified)
Error in i.p(...) :
(converted from warning) installation of package ‘/tmp/Rtmp6SKBdU/file5d02f6890c7/threadr_0.9.002.tar.gz’ had non-zero exit status
Session Info
Below is my session info
> sessionInfo()
R version 3.5.2 (2018-12-20)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Debian GNU/Linux 9 (stretch)
Matrix products: default
BLAS: /usr/lib/openblas-base/libblas.so.3
LAPACK: /usr/lib/libopenblasp-r0.2.19.so
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8 LC_MONETARY=en_US.UTF-8
[6] LC_MESSAGES=C LC_PAPER=en_US.UTF-8 LC_NAME=C LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
loaded via a namespace (and not attached):
[1] Rcpp_1.0.0 rstudioapi_0.9.0 magrittr_1.5 usethis_1.4.0 devtools_2.0.1 pkgload_1.0.2 R6_2.3.0 rlang_0.3.1
[9] tools_3.5.2 pkgbuild_1.0.2 parallel_3.5.2 sessioninfo_1.1.1 cli_1.0.1 withr_2.1.2 remotes_2.0.2 yaml_2.2.0
[17] assertthat_0.2.0 rprojroot_1.3-2 digest_0.6.18 crayon_1.3.4 processx_3.2.1 callr_3.1.1 fs_1.2.6 ps_1.3.0
[25] testthat_2.0.1 curl_3.3 glue_1.3.0 memoise_1.1.0 compiler_3.5.2 desc_1.2.0 backports_1.1.3 prettyunits_1.0.2
Steps to reproduce
I used docker from rocker and tried to install threadr package and it did not work.
Alternatives solution for time being
> devtools::install_github("skgrange/threadr@a0f80e9035f78048adf7e9371c204e148dff5073", dependencies = c("Depends", "Imports"))
Downloading GitHub repo skgrange/threadr@a0f80e9035f78048adf7e9371c204e148dff5073
Installing 2 packages: fuzzyjoin, geosphere
Installing packages into ‘/usr/local/lib/R/site-library’
(as ‘lib’ is unspecified)
trying URL 'https://mran.microsoft.com/snapshot/2019-02-02/src/contrib/fuzzyjoin_0.1.4.tar.gz'
Content type 'application/octet-stream' length 101076 bytes (98 KB)
==================================================
downloaded 98 KB
trying URL 'https://mran.microsoft.com/snapshot/2019-02-02/src/contrib/geosphere_1.5-7.tar.gz'
Content type 'application/octet-stream' length 758133 bytes (740 KB)
==================================================
downloaded 740 KB
gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dist.c -o dist.o
gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c geodesic.c -o geodesic.o
gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c geolib.c -o geolib.o
gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c geosphere_init.c -o geosphere_init.o
gcc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c util.c -o util.o
gcc -shared -L/usr/local/lib/R/lib -L/usr/local/lib -o geosphere.so dist.o geodesic.o geolib.o geosphere_init.o util.o -L/usr/local/lib/R/lib -lR
The downloaded source packages are in
‘/tmp/Rtmp6SKBdU/downloaded_packages’
✔ checking for file ‘/tmp/Rtmp6SKBdU/remotes5d01cff0bf3/skgrange-threadr-a0f80e9/DESCRIPTION’ ...
─ preparing ‘threadr’:
✔ checking DESCRIPTION meta-information ...
─ checking for LF line-endings in source and make files and shell scripts
─ checking for empty or unneeded directories
─ building ‘threadr_0.8.716.tar.gz’
Installing package into ‘/usr/local/lib/R/site-library’
(as ‘lib’ is unspecified)
pkgdown site
Have you thought about a pkgdown site for your package documentation?
I think it will help a user to identify what is in your package in a nice format.
Be happy to make a pull request if you are unfamiliar with pkgdown to demonstrate
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