sk-sahu Goto Github PK

bactmap

A mapping-based pipeline for creating a phylogeny from bacterial whole genome sequences

bioconductor_docker_shiny

Bioconductor docker image with Shiny Server.

blog

Blogging site hosted on Netlify (https://sksahu-blog.netlify.com)

code

Ready to use Gitpod/VScode IDE with Prebuilt Dev Environment

covid19-dashboard

Yet another covid19-dashboard

dc-genomics-workshop-testout

ecogex

Arabidopsis EcoGEx (R-📦 + 🕸️-App)

editor.rmd

form

A form deploy via gh-pages

learn-python

This repository host a binder instance with few libraries installed for teaching purpose

learn-r

Materials to learn R focused on Lab Biologist

mamba

docker image for mamba - https://github.com/QuantStack/mamba

maser

Mapping Alternative Splicing Events to pRoteins

modules

Repository to host tool-specific module files for the Nextflow DSL2 community!

multi-omics-state-of-the-field

Analyses for "State of the Field in Multi-Omics Research: From Computational Needs to Data Mining and Sharing"

my-app

Testing React App

notes

Live (.ipynb) and static (.md) notebooks

pgrb

Practical Guide to Reproducibility in Bioinformatics (Work In Progress)

r-azure-pipelines

Test R package for azure pipelines in R 3.5 and 3.6

rmplates

R package contains collection of useful Rmd Templates

rnadeseq

Differential gene expression analysis and pathway analysis of RNAseq data

rnaseq

RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

rnaseq-nf

A proof of concept of RNAseq pipeline

runner

Ready to use Running R Instances (Run-R == RunneR)

sahu

Personal R package with regular utility functions and APIs library

sarek

Analysis pipeline to detect germline or somatic variants from WGS / targeted sequencing

scrnaseq

A single-cell RNAseq pipeline for 10X genomics data

sig-bio-shiny

A standalone interactive application for detecting biological significance on a set of genes

sigbio-shiny-slides

sk-sahu