sivaramakrishnan-rajaraman / bone-suppresion-ensemble Goto Github PK

Adding a conda environment (environment.yml) facilitates code re-use.

The version constraints given in the README.md e.g for keras and tensorflow-gpu (although specified as >=) proved difficult to resolve in terms of inter-dependencies over all the packages needed (which is where conda has a strength over e.g. Python virtualenv environments). The version constraints therefore need to be relaxed a little but keep the core version constraint of keras >= 2.4.0. Since v2 of tensorflow, keras and tensorflow come packaged together anyway, so specifiying the keras version also sets the tensorflow version and compatibility is guaranteed.

Just running the Python script from the cmdline blindly gives the following error:

python bone_suppression_ensemble.py 

  File "[...]/Bone-Suppresion-Ensemble/bone_suppression_ensemble.py", line 594
    """
       ^
SyntaxError: (unicode error) 'unicodeescape' codec can't decode bytes in position 132-133: truncated \UXXXXXXXX escape

This is almost certainly due to the Windows path given on line 573:

path = ['C:\Users\<your folder>'];  

Although I appreciate this occurs within a Matlab script rather than pure Python.