Generate softmasked genome file for masked hard_regions in genome.fa
pip install bio string
python3 hard2soft.py -h
Generate softmasked genome file for masked hard_regions in genome.fa
options:
-h, --help show this help message and exit
-i INPUT, --input INPUT
Input hard genome fasta file
-o OUTPUT, --output OUTPUT
Output soft genome fasta file
-r REF, --ref REF Reference genome fasta file