π° Manual and Documentation is available at: OmicLearn Wiki Page
Transparent exploration of machine learning for biomarker discovery from proteomics and omics data.
Citation:
Transparent exploration of machine learning for biomarker discovery from proteomics and omics data
Furkan M Torun, Sebastian Virreira Winter, Sophia Doll, Felix M Riese, Artem Vorobyev, Johannes B MΓΌller-Reif, Philipp E Geyer, Maximilian T Strauss
bioRxiv 2021.03.05.434053; doi: https://doi.org/10.1101/2021.03.05.434053
π’ OmicLearn.com
More information about
Installation & Running
is available on our Wiki pages.
-
It is strongly recommended to install OmicLearn in its own environment using Anaconda or Miniconda.
- Redirect to the folder of choice and clone the repository:
git clone https://github.com/OmicEra/OmicLearn
- Install the required packages with
conda env create --file environment.yml
- Activate the environment with
conda activate omic_learn
- Redirect to the folder of choice and clone the repository:
-
After a successful installation, type the following command to run OmicLearn:
streamlit run omic_learn.py --browser.gatherUsageStats False
Running with Docker
option is also available. Please, check the installation instructions on the Wiki pages. -
After starting the streamlit server, the OmicLearn page should be automatically opened in your browser (Default link:
http://localhost:8501
The following image displays the main steps of OmicLearn:
Detailed instructions on how to get started with OmicLearn can be found here.
On this page, you can click on the titles listed in the Table of Contents, which contain instructions for each section.
All contributions are welcome. π
π° To get started, please check out our CONTRIBUTING
guidelines.
When contributing to OmicLearn, please open a new issue to report the bug or discuss the changes you plan before sending a PR (pull request).
We appreciate community contributions to the repository. By signing our OmicEra Individual Contributor License Agreement
, we ensure that the community is free to use your contributions. π€