Git Product home page Git Product logo

coding-challenge-s21's Introduction

ACM Research Coding Challenge (Spring 2021)

Submission Procedure

Please follow the below instructions on how to submit your answers.

  1. Create a public fork of this repo and name it ACM-Research-Coding-Challenge-S21. To fork this repo, click the button on the top right and click the "Fork" button.
  2. Clone the fork of the repo to your computer using git clone [the URL of your clone]. You may need to install Git for this (Google it).
  3. Complete the Challenge based on the instructions below.
  4. Submit your solution by filling out this form.

Question One

Genome analysis is the identification of genomic features such as gene expression or DNA sequences in an individual's genetic makeup. A genbank file (.gb) format contains information about an individual's DNA sequence. The following dataset in Genome.gb contains a complete genome sequence of Tomato Curly Stunt Virus.

With this file, create a circular genome map and output it as a JPG/PNG/JPEG format. We're not looking for any complex maps, just be sure to highlight the features and their labels.

You may use any programming language you feel most comfortable. We recommend Python because it is the easiest to implement. You're allowed to use any library you want to implement this, just document which ones you used in this README file. Try to complete this as soon as possible.

Regardless if you can or cannot answer the question, provide a short explanation of how you got your solution or how you think it can be solved in your README.md file. However, we highly recommend giving the challenge a try, you just might learn something new!

The Thought process

-> The start to my thought process was provided in the instructions, usually the first step is to figure out the languages and technologies to use, (Whenever my brain hears graphics, it goes straight to JavaScript lol), but with the direction provided, I looked at possible libraries with python.

-> A quick search resulted in BioPython and GenomeDiagram. With a little indication of where I was heading, I reached out to a friend in Bio-chemistry major to learn more about genome mapping.

-> I read through BioPython and GenomeDiagram's documentation, and I got to know that GenomeDiagram was now a part of the BioPython (Resource used - https://biopython.org/wiki/Getting_Started)

-> Now with the parsing of the data handeled, I needed to work on GenomeDiagram to present the data, and fortunately Documentation for GenomeDiagram came with the necessary instructiions for another library - ReportLab, as well. (https://biopython-tutorial.readthedocs.io/en/latest/notebooks/17%20-%20Graphics%20including%20GenomeDiagram.html)

coding-challenge-s21's People

Contributors

ryankwu avatar shubhsinghgarg avatar

Recommend Projects

  • React photo React

    A declarative, efficient, and flexible JavaScript library for building user interfaces.

  • Vue.js photo Vue.js

    ๐Ÿ–– Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.

  • Typescript photo Typescript

    TypeScript is a superset of JavaScript that compiles to clean JavaScript output.

  • TensorFlow photo TensorFlow

    An Open Source Machine Learning Framework for Everyone

  • Django photo Django

    The Web framework for perfectionists with deadlines.

  • D3 photo D3

    Bring data to life with SVG, Canvas and HTML. ๐Ÿ“Š๐Ÿ“ˆ๐ŸŽ‰

Recommend Topics

  • javascript

    JavaScript (JS) is a lightweight interpreted programming language with first-class functions.

  • web

    Some thing interesting about web. New door for the world.

  • server

    A server is a program made to process requests and deliver data to clients.

  • Machine learning

    Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.

  • Game

    Some thing interesting about game, make everyone happy.

Recommend Org

  • Facebook photo Facebook

    We are working to build community through open source technology. NB: members must have two-factor auth.

  • Microsoft photo Microsoft

    Open source projects and samples from Microsoft.

  • Google photo Google

    Google โค๏ธ Open Source for everyone.

  • D3 photo D3

    Data-Driven Documents codes.