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capture's Issues

SPAdes integration

  • run spades on all the subsets
  • store assembly outputs
  • at this point there should be a cleanup process that get rid of the temp files

Initial setup - input files

  • read fastq file(s)
    • fastq
    • fastq.gz
    • sam/bam
  • given a known genome size, calculate how many reads for 100x coverage
  • create temp files (in outout dir) with subset of reads

Initial setup - get test input.

  • get real data. Those will be use for interactive tests and to assess performance of the assembler
  • get mock dataset for travis (use InSilcioSeq for that)

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