The ./waf check fails after successful build and configure about sferes2 HOT 18 CLOSED

On Thu, Feb 1, 2018 at 3:32 AM, Konstantinos Chatzilygeroudis < ***@***.***> wrote: You should run ./waf --tests to run the tests. We updated the wscript (and waf) and most probably did not update the docs..! — You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub <#71 (comment)>, or mute the thread <https://github.com/notifications/unsubscribe-auth/AMmtrHdXXa1kYt3adYedMdJeQJfPEsCZks5tQYSUgaJpZM4R1HPf> .

On Thu, Feb 1, 2018 at 10:39 AM, Nick Sabaj ***@***.***> wrote: Awesome, thank you! I hope you have a wonderful day! On Thu, Feb 1, 2018 at 3:32 AM, Konstantinos Chatzilygeroudis < ***@***.***> wrote: > You should run ./waf --tests to run the tests. We updated the wscript > (and waf) and most probably did not update the docs..! > > — > You are receiving this because you authored the thread. > Reply to this email directly, view it on GitHub > <#71 (comment)>, > or mute the thread > <https://github.com/notifications/unsubscribe-auth/AMmtrHdXXa1kYt3adYedMdJeQJfPEsCZks5tQYSUgaJpZM4R1HPf> > . >

On Fri, Feb 2, 2018 at 1:50 AM, JB Mouret ***@***.***> wrote: Thank you. Which version of boost do you use? On Fri, Feb 2, 2018 at 8:22 AM Nick Sabaj ***@***.***> wrote: > Hi again; the tests you specified show a single failure, a fatal error in > "bitstring_serialize" and "bitstring_serialize_long". > I think it's related to this section I noticed in the terminal: > > [33/44] Compiling tests/gen/bit_string.cpp > In file included from ../tests/gen/bit_string.cpp:38:0: > /home/nick/Desktop/sferes2/sferes/gen/bit_string.hpp:54:3: warning: > #warning DO NOT use bit_string with boost 1.58 (bug in the serialization > library) [-Wcpp] > # warning DO NOT use bit_string with boost 1.58 (bug in the serialization > library) > > Since the only failing test is tests_gen_bit_string, I think it's probably > just a boost version issue. I'll try playing around with it to fix things; > I'll send you whatever the solution ends up being. > > > On Thu, Feb 1, 2018 at 10:39 AM, Nick Sabaj ***@***.***> > wrote: > > > Awesome, thank you! I hope you have a wonderful day! > > > > On Thu, Feb 1, 2018 at 3:32 AM, Konstantinos Chatzilygeroudis < > > ***@***.***> wrote: > > > >> You should run ./waf --tests to run the tests. We updated the wscript > >> (and waf) and most probably did not update the docs..! > >> > >> — > >> You are receiving this because you authored the thread. > >> Reply to this email directly, view it on GitHub > >> <#71 (comment) >, > >> or mute the thread > >> < > https://github.com/notifications/unsubscribe-auth/ AMmtrHdXXa1kYt3adYedMdJeQJfPEsCZks5tQYSUgaJpZM4R1HPf > > > >> . > >> > > > > > > — > You are receiving this because you commented. > > > Reply to this email directly, view it on GitHub > <#71 (comment)>, or mute > the thread > <https://github.com/notifications/unsubscribe-auth/ AFu8v3IPWA7y61Q6HVUhXf2bainJCuKlks5tQrfDgaJpZM4R1HPf> > . > -- [ ERC ResiBots: http://www.resibots.eu ] [ Web: http://members.loria.fr/JBMouret ] — You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub <#71 (comment)>, or mute the thread <https://github.com/notifications/unsubscribe-auth/AMmtrJvN0VC1y_VNWHPDHGGhflBmiq65ks5tQr5dgaJpZM4R1HPf> .

On Fri, Feb 2, 2018 at 7:10 PM, Nick Sabaj ***@***.***> wrote: Currently using 1.58 Sorry for the slow response- delayed throughout the day until now. Which Boost version should I use? I'll check older and newer versions, but I'd love to know the best choice, to prevent later issues. On Fri, Feb 2, 2018 at 1:50 AM, JB Mouret ***@***.***> wrote: > Thank you. Which version of boost do you use? > > > On Fri, Feb 2, 2018 at 8:22 AM Nick Sabaj ***@***.***> > wrote: > > > Hi again; the tests you specified show a single failure, a fatal error > in > > "bitstring_serialize" and "bitstring_serialize_long". > > I think it's related to this section I noticed in the terminal: > > > > [33/44] Compiling tests/gen/bit_string.cpp > > In file included from ../tests/gen/bit_string.cpp:38:0: > > /home/nick/Desktop/sferes2/sferes/gen/bit_string.hpp:54:3: warning: > > #warning DO NOT use bit_string with boost 1.58 (bug in the serialization > > library) [-Wcpp] > > # warning DO NOT use bit_string with boost 1.58 (bug in the > serialization > > library) > > > > Since the only failing test is tests_gen_bit_string, I think it's > probably > > just a boost version issue. I'll try playing around with it to fix > things; > > I'll send you whatever the solution ends up being. > > > > > > On Thu, Feb 1, 2018 at 10:39 AM, Nick Sabaj ***@***.***> > > wrote: > > > > > Awesome, thank you! I hope you have a wonderful day! > > > > > > On Thu, Feb 1, 2018 at 3:32 AM, Konstantinos Chatzilygeroudis < > > > ***@***.***> wrote: > > > > > >> You should run ./waf --tests to run the tests. We updated the wscript > > >> (and waf) and most probably did not update the docs..! > > >> > > >> — > > >> You are receiving this because you authored the thread. > > >> Reply to this email directly, view it on GitHub > > >> <#71 (comment) > >, > > >> or mute the thread > > >> < > > https://github.com/notifications/unsubscribe-auth/AMmtrHdXXa > 1kYt3adYedMdJeQJfPEsCZks5tQYSUgaJpZM4R1HPf > > > > > >> . > > >> > > > > > > > > > > — > > You are receiving this because you commented. > > > > > > Reply to this email directly, view it on GitHub > > <#71 (comment)>, > or mute > > the thread > > <https://github.com/notifications/unsubscribe-auth/AFu8v3IPW > A7y61Q6HVUhXf2bainJCuKlks5tQrfDgaJpZM4R1HPf> > > . > > > -- > [ ERC ResiBots: http://www.resibots.eu ] > [ Web: http://members.loria.fr/JBMouret ] > > — > You are receiving this because you authored the thread. > Reply to this email directly, view it on GitHub > <#71 (comment)>, > or mute the thread > <https://github.com/notifications/unsubscribe-auth/AMmtrJvN0VC1y_VNWHPDHGGhflBmiq65ks5tQr5dgaJpZM4R1HPf> > . >

On Fri, Feb 2, 2018 at 7:15 PM, Nick Sabaj ***@***.***> wrote: The comments in bit_string.hpp specify to not use version 1.58 of Boost, but don't say what version of Boost is known to work. On Fri, Feb 2, 2018 at 7:10 PM, Nick Sabaj ***@***.***> wrote: > Currently using 1.58 > Sorry for the slow response- delayed throughout the day until now. > Which Boost version should I use? I'll check older and newer versions, > but I'd love to know the best choice, to prevent later issues. > > On Fri, Feb 2, 2018 at 1:50 AM, JB Mouret ***@***.***> > wrote: > >> Thank you. Which version of boost do you use? >> >> >> On Fri, Feb 2, 2018 at 8:22 AM Nick Sabaj ***@***.***> >> wrote: >> >> > Hi again; the tests you specified show a single failure, a fatal error >> in >> > "bitstring_serialize" and "bitstring_serialize_long". >> > I think it's related to this section I noticed in the terminal: >> > >> > [33/44] Compiling tests/gen/bit_string.cpp >> > In file included from ../tests/gen/bit_string.cpp:38:0: >> > /home/nick/Desktop/sferes2/sferes/gen/bit_string.hpp:54:3: warning: >> > #warning DO NOT use bit_string with boost 1.58 (bug in the >> serialization >> > library) [-Wcpp] >> > # warning DO NOT use bit_string with boost 1.58 (bug in the >> serialization >> > library) >> > >> > Since the only failing test is tests_gen_bit_string, I think it's >> probably >> > just a boost version issue. I'll try playing around with it to fix >> things; >> > I'll send you whatever the solution ends up being. >> > >> > >> > On Thu, Feb 1, 2018 at 10:39 AM, Nick Sabaj ***@***.***> >> > wrote: >> > >> > > Awesome, thank you! I hope you have a wonderful day! >> > > >> > > On Thu, Feb 1, 2018 at 3:32 AM, Konstantinos Chatzilygeroudis < >> > > ***@***.***> wrote: >> > > >> > >> You should run ./waf --tests to run the tests. We updated the >> wscript >> > >> (and waf) and most probably did not update the docs..! >> > >> >> > >> — >> > >> You are receiving this because you authored the thread. >> > >> Reply to this email directly, view it on GitHub >> > >> <#71 (comment) >> 62209227>, >> > >> or mute the thread >> > >> < >> > https://github.com/notifications/unsubscribe-auth/AMmtrHdXXa >> 1kYt3adYedMdJeQJfPEsCZks5tQYSUgaJpZM4R1HPf >> > > >> > >> . >> > >> >> > > >> > > >> > >> > — >> > You are receiving this because you commented. >> > >> > >> > Reply to this email directly, view it on GitHub >> > <#71 (comment)>, >> or mute >> > the thread >> > <https://github.com/notifications/unsubscribe-auth/AFu8v3IPW >> A7y61Q6HVUhXf2bainJCuKlks5tQrfDgaJpZM4R1HPf> >> > . >> > >> -- >> [ ERC ResiBots: http://www.resibots.eu ] >> [ Web: http://members.loria.fr/JBMouret ] >> >> — >> You are receiving this because you authored the thread. >> Reply to this email directly, view it on GitHub >> <#71 (comment)>, >> or mute the thread >> <https://github.com/notifications/unsubscribe-auth/AMmtrJvN0VC1y_VNWHPDHGGhflBmiq65ks5tQr5dgaJpZM4R1HPf> >> . >> > >

On Sat, Feb 3, 2018, 05:54 Nick Sabaj ***@***.***> wrote: Ok, now the tests succeed, but I tried ./waf configure again, and I got the following error: Checking boost includes : 1_58 Checking boost libs : lib mpi not found in lib (complete log in /home/nick/Desktop/sferes2/build/config.log) So this is probably ok, but I wanted you to know of that hiccup, in case it portends disaster. I'm only currently using my laptop for this, so MPI might not be an issue at the moment, but we'll probably be scaling up to a cluster shortly after we get this running on a laptop. These < https://askubuntu.com/questions/859333/how-to-install-libboost-version1-59-or-newer-on-ubuntu16-04 > instructions seemed to fix things, btw. The instructions also mentioned rebuilding Ubuntu to a more recent version, but I haven't done that yet as the tests passed and I wanted to make sure that wouldn't muddy the waters of troubleshooting for future users with this issue. Current plan is to try playing around with sferes, and see if it crashes, unless you indicate that the MPI is critical, and might be worth exploring. On Fri, Feb 2, 2018 at 7:15 PM, Nick Sabaj ***@***.***> wrote: > The comments in bit_string.hpp specify to not use version 1.58 of Boost, > but don't say what version of Boost is known to work. > > On Fri, Feb 2, 2018 at 7:10 PM, Nick Sabaj ***@***.***> > wrote: > >> Currently using 1.58 >> Sorry for the slow response- delayed throughout the day until now. >> Which Boost version should I use? I'll check older and newer versions, >> but I'd love to know the best choice, to prevent later issues. >> >> On Fri, Feb 2, 2018 at 1:50 AM, JB Mouret ***@***.***> >> wrote: >> >>> Thank you. Which version of boost do you use? >>> >>> >>> On Fri, Feb 2, 2018 at 8:22 AM Nick Sabaj ***@***.***> >>> wrote: >>> >>> > Hi again; the tests you specified show a single failure, a fatal error >>> in >>> > "bitstring_serialize" and "bitstring_serialize_long". >>> > I think it's related to this section I noticed in the terminal: >>> > >>> > [33/44] Compiling tests/gen/bit_string.cpp >>> > In file included from ../tests/gen/bit_string.cpp:38:0: >>> > /home/nick/Desktop/sferes2/sferes/gen/bit_string.hpp:54:3: warning: >>> > #warning DO NOT use bit_string with boost 1.58 (bug in the >>> serialization >>> > library) [-Wcpp] >>> > # warning DO NOT use bit_string with boost 1.58 (bug in the >>> serialization >>> > library) >>> > >>> > Since the only failing test is tests_gen_bit_string, I think it's >>> probably >>> > just a boost version issue. I'll try playing around with it to fix >>> things; >>> > I'll send you whatever the solution ends up being. >>> > >>> > >>> > On Thu, Feb 1, 2018 at 10:39 AM, Nick Sabaj ***@***.*** > >>> > wrote: >>> > >>> > > Awesome, thank you! I hope you have a wonderful day! >>> > > >>> > > On Thu, Feb 1, 2018 at 3:32 AM, Konstantinos Chatzilygeroudis < >>> > > ***@***.***> wrote: >>> > > >>> > >> You should run ./waf --tests to run the tests. We updated the >>> wscript >>> > >> (and waf) and most probably did not update the docs..! >>> > >> >>> > >> — >>> > >> You are receiving this because you authored the thread. >>> > >> Reply to this email directly, view it on GitHub >>> > >> <#71 (comment) >>> 62209227>, >>> > >> or mute the thread >>> > >> < >>> > https://github.com/notifications/unsubscribe-auth/AMmtrHdXXa >>> 1kYt3adYedMdJeQJfPEsCZks5tQYSUgaJpZM4R1HPf >>> > > >>> > >> . >>> > >> >>> > > >>> > > >>> > >>> > — >>> > You are receiving this because you commented. >>> > >>> > >>> > Reply to this email directly, view it on GitHub >>> > <#71 (comment) >, >>> or mute >>> > the thread >>> > <https://github.com/notifications/unsubscribe-auth/AFu8v3IPW >>> A7y61Q6HVUhXf2bainJCuKlks5tQrfDgaJpZM4R1HPf> >>> > . >>> > >>> -- >>> [ ERC ResiBots: http://www.resibots.eu ] >>> [ Web: http://members.loria.fr/JBMouret ] >>> >>> — >>> You are receiving this because you authored the thread. >>> Reply to this email directly, view it on GitHub >>> <#71 (comment)>, >>> or mute the thread >>> < https://github.com/notifications/unsubscribe-auth/AMmtrJvN0VC1y_VNWHPDHGGhflBmiq65ks5tQr5dgaJpZM4R1HPf > >>> . >>> >> >> > — You are receiving this because you commented. Reply to this email directly, view it on GitHub <#71 (comment)>, or mute the thread <https://github.com/notifications/unsubscribe-auth/AFu8v8NDD0-93X_PMFDL0H1X-1wPYjXOks5tQ-ZigaJpZM4R1HPf> .

.

On Sat, Feb 3, 2018, 06:51 Nick Sabaj ***@***.***> wrote: Yes, the version I'm using now is 1.66; that's the version which is giving me MPI issues. What Boost version do you use, and how do you suggest resolving the MPI issue? On Feb 2, 2018 11:42 PM, "JB Mouret" ***@***.***> wrote: Any other version of boost should work. They introduced a bug in 1.58 that was corrected in 1.58. We are using more recent versions but an older version should work. MPI is not useful on a single computer (but tbb). The issue is that the recent libboost in Ubuntu does not include the boost-mpi library (to avoid the openmpi reps). On Sat, Feb 3, 2018, 05:54 Nick Sabaj ***@***.***> wrote: > Ok, now the tests succeed, but I tried ./waf configure again, and I got the > following error: > > Checking boost includes : 1_58 > Checking boost libs : lib mpi not found in lib > (complete log in /home/nick/Desktop/sferes2/build/config.log) > > So this is probably ok, but I wanted you to know of that hiccup, in case it > portends disaster. I'm only currently using my laptop for this, so MPI > might not be an issue at the moment, but we'll probably be scaling up to a > cluster shortly after we get this running on a laptop. > > These > < > https://askubuntu.com/questions/859333/how-to- install-libboost-version1-59-or-newer-on-ubuntu16-04 > > > instructions seemed to fix things, btw. The instructions also mentioned > rebuilding Ubuntu to a more recent version, but I haven't done that yet as > the tests passed and I wanted to make sure that wouldn't muddy the waters > of troubleshooting for future users with this issue. Current plan is to try > playing around with sferes, and see if it crashes, unless you indicate that > the MPI is critical, and might be worth exploring. > > On Fri, Feb 2, 2018 at 7:15 PM, Nick Sabaj ***@***.***> > wrote: > > > The comments in bit_string.hpp specify to not use version 1.58 of Boost, > > but don't say what version of Boost is known to work. > > > > On Fri, Feb 2, 2018 at 7:10 PM, Nick Sabaj ***@***.***> > > wrote: > > > >> Currently using 1.58 > >> Sorry for the slow response- delayed throughout the day until now. > >> Which Boost version should I use? I'll check older and newer versions, > >> but I'd love to know the best choice, to prevent later issues. > >> > >> On Fri, Feb 2, 2018 at 1:50 AM, JB Mouret ***@***.***> > >> wrote: > >> > >>> Thank you. Which version of boost do you use? > >>> > >>> > >>> On Fri, Feb 2, 2018 at 8:22 AM Nick Sabaj ***@***.***> > >>> wrote: > >>> > >>> > Hi again; the tests you specified show a single failure, a fatal > error > >>> in > >>> > "bitstring_serialize" and "bitstring_serialize_long". > >>> > I think it's related to this section I noticed in the terminal: > >>> > > >>> > [33/44] Compiling tests/gen/bit_string.cpp > >>> > In file included from ../tests/gen/bit_string.cpp:38:0: > >>> > /home/nick/Desktop/sferes2/sferes/gen/bit_string.hpp:54:3: warning: > >>> > #warning DO NOT use bit_string with boost 1.58 (bug in the > >>> serialization > >>> > library) [-Wcpp] > >>> > # warning DO NOT use bit_string with boost 1.58 (bug in the > >>> serialization > >>> > library) > >>> > > >>> > Since the only failing test is tests_gen_bit_string, I think it's > >>> probably > >>> > just a boost version issue. I'll try playing around with it to fix > >>> things; > >>> > I'll send you whatever the solution ends up being. > >>> > > >>> > > >>> > On Thu, Feb 1, 2018 at 10:39 AM, Nick Sabaj < ***@***.*** > > > >>> > wrote: > >>> > > >>> > > Awesome, thank you! I hope you have a wonderful day! > >>> > > > >>> > > On Thu, Feb 1, 2018 at 3:32 AM, Konstantinos Chatzilygeroudis < > >>> > > ***@***.***> wrote: > >>> > > > >>> > >> You should run ./waf --tests to run the tests. We updated the > >>> wscript > >>> > >> (and waf) and most probably did not update the docs..! > >>> > >> > >>> > >> — > >>> > >> You are receiving this because you authored the thread. > >>> > >> Reply to this email directly, view it on GitHub > >>> > >> <#71 (comment) > >>> 62209227>, > >>> > >> or mute the thread > >>> > >> < > >>> > https://github.com/notifications/unsubscribe-auth/AMmtrHdXXa > >>> 1kYt3adYedMdJeQJfPEsCZks5tQYSUgaJpZM4R1HPf > >>> > > > >>> > >> . > >>> > >> > >>> > > > >>> > > > >>> > > >>> > — > >>> > You are receiving this because you commented. > >>> > > >>> > > >>> > Reply to this email directly, view it on GitHub > >>> > < #71 (comment) > >, > >>> or mute > >>> > the thread > >>> > <https://github.com/notifications/unsubscribe-auth/AFu8v3IPW > >>> A7y61Q6HVUhXf2bainJCuKlks5tQrfDgaJpZM4R1HPf> > >>> > . > >>> > > >>> -- > >>> [ ERC ResiBots: http://www.resibots.eu ] > >>> [ Web: http://members.loria.fr/JBMouret ] > >>> > >>> — > >>> You are receiving this because you authored the thread. > >>> Reply to this email directly, view it on GitHub > >>> <#71 (comment) >, > >>> or mute the thread > >>> < > https://github.com/notifications/unsubscribe-auth/AMmtrJvN0VC1y_ VNWHPDHGGhflBmiq65ks5tQr5dgaJpZM4R1HPf > > > >>> . > >>> > >> > >> > > > > — > You are receiving this because you commented. > > > Reply to this email directly, view it on GitHub > <#71 (comment)>, or mute > the thread > <https://github.com/notifications/unsubscribe- auth/AFu8v8NDD0-93X_PMFDL0H1X-1wPYjXOks5tQ-ZigaJpZM4R1HPf> > . > -- [ ERC ResiBots: http://www.resibots.eu ] [ Web: http://members.loria.fr/JBMouret ] — You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub <#71 (comment)>, or mute the thread < https://github.com/notifications/unsubscribe-auth/AMmtrE2HEriDthDzwF4BRM9zQ1WvVbhnks5tQ_GxgaJpZM4R1HPf > . — You are receiving this because you commented. Reply to this email directly, view it on GitHub <#71 (comment)>, or mute the thread <https://github.com/notifications/unsubscribe-auth/AFu8v1ii9419kzksR_AhTDztEm1tyAHkks5tQ_PmgaJpZM4R1HPf> .

On Sat, Feb 3, 2018 at 1:46 AM, JB Mouret ***@***.***> wrote: Did you install it with the Ubuntu packages? I believe you also need to install the boost-mpi package: https://packages.ubuntu.com/bionic/libboost-mpi1.65-dev On Sat, Feb 3, 2018, 06:51 Nick Sabaj ***@***.***> wrote: > Yes, the version I'm using now is 1.66; that's the version which is giving > me MPI issues. What Boost version do you use, and how do you suggest > resolving the MPI issue? > > On Feb 2, 2018 11:42 PM, "JB Mouret" ***@***.***> wrote: > > Any other version of boost should work. They introduced a bug in 1.58 that > was corrected in 1.58. We are using more recent versions but an older > version should work. > > MPI is not useful on a single computer (but tbb). The issue is that the > recent libboost in Ubuntu does not include the boost-mpi library (to avoid > the openmpi reps). > > > On Sat, Feb 3, 2018, 05:54 Nick Sabaj ***@***.***> wrote: > > > Ok, now the tests succeed, but I tried ./waf configure again, and I got > the > > following error: > > > > Checking boost includes : 1_58 > > Checking boost libs : lib mpi not found in lib > > (complete log in /home/nick/Desktop/sferes2/build/config.log) > > > > So this is probably ok, but I wanted you to know of that hiccup, in case > it > > portends disaster. I'm only currently using my laptop for this, so MPI > > might not be an issue at the moment, but we'll probably be scaling up to > a > > cluster shortly after we get this running on a laptop. > > > > These > > < > > https://askubuntu.com/questions/859333/how-to- > install-libboost-version1-59-or-newer-on-ubuntu16-04 > > > > > > instructions seemed to fix things, btw. The instructions also mentioned > > rebuilding Ubuntu to a more recent version, but I haven't done that yet > as > > the tests passed and I wanted to make sure that wouldn't muddy the waters > > of troubleshooting for future users with this issue. Current plan is to > try > > playing around with sferes, and see if it crashes, unless you indicate > that > > the MPI is critical, and might be worth exploring. > > > > On Fri, Feb 2, 2018 at 7:15 PM, Nick Sabaj ***@***.***> > > wrote: > > > > > The comments in bit_string.hpp specify to not use version 1.58 of > Boost, > > > but don't say what version of Boost is known to work. > > > > > > On Fri, Feb 2, 2018 at 7:10 PM, Nick Sabaj ***@***.***> > > > wrote: > > > > > >> Currently using 1.58 > > >> Sorry for the slow response- delayed throughout the day until now. > > >> Which Boost version should I use? I'll check older and newer versions, > > >> but I'd love to know the best choice, to prevent later issues. > > >> > > >> On Fri, Feb 2, 2018 at 1:50 AM, JB Mouret ***@***.*** > > > >> wrote: > > >> > > >>> Thank you. Which version of boost do you use? > > >>> > > >>> > > >>> On Fri, Feb 2, 2018 at 8:22 AM Nick Sabaj < ***@***.***> > > >>> wrote: > > >>> > > >>> > Hi again; the tests you specified show a single failure, a fatal > > error > > >>> in > > >>> > "bitstring_serialize" and "bitstring_serialize_long". > > >>> > I think it's related to this section I noticed in the terminal: > > >>> > > > >>> > [33/44] Compiling tests/gen/bit_string.cpp > > >>> > In file included from ../tests/gen/bit_string.cpp:38:0: > > >>> > /home/nick/Desktop/sferes2/sferes/gen/bit_string.hpp:54:3: warning: > > >>> > #warning DO NOT use bit_string with boost 1.58 (bug in the > > >>> serialization > > >>> > library) [-Wcpp] > > >>> > # warning DO NOT use bit_string with boost 1.58 (bug in the > > >>> serialization > > >>> > library) > > >>> > > > >>> > Since the only failing test is tests_gen_bit_string, I think it's > > >>> probably > > >>> > just a boost version issue. I'll try playing around with it to fix > > >>> things; > > >>> > I'll send you whatever the solution ends up being. > > >>> > > > >>> > > > >>> > On Thu, Feb 1, 2018 at 10:39 AM, Nick Sabaj < > ***@***.*** > > > > > >>> > wrote: > > >>> > > > >>> > > Awesome, thank you! I hope you have a wonderful day! > > >>> > > > > >>> > > On Thu, Feb 1, 2018 at 3:32 AM, Konstantinos Chatzilygeroudis < > > >>> > > ***@***.***> wrote: > > >>> > > > > >>> > >> You should run ./waf --tests to run the tests. We updated the > > >>> wscript > > >>> > >> (and waf) and most probably did not update the docs..! > > >>> > >> > > >>> > >> — > > >>> > >> You are receiving this because you authored the thread. > > >>> > >> Reply to this email directly, view it on GitHub > > >>> > >> <#71 (comment) > > >>> 62209227>, > > >>> > >> or mute the thread > > >>> > >> < > > >>> > https://github.com/notifications/unsubscribe-auth/AMmtrHdXXa > > >>> 1kYt3adYedMdJeQJfPEsCZks5tQYSUgaJpZM4R1HPf > > >>> > > > > >>> > >> . > > >>> > >> > > >>> > > > > >>> > > > > >>> > > > >>> > — > > >>> > You are receiving this because you commented. > > >>> > > > >>> > > > >>> > Reply to this email directly, view it on GitHub > > >>> > < > #71 (comment) > > >, > > >>> or mute > > >>> > the thread > > >>> > <https://github.com/notifications/unsubscribe-auth/AFu8v3IPW > > >>> A7y61Q6HVUhXf2bainJCuKlks5tQrfDgaJpZM4R1HPf> > > >>> > . > > >>> > > > >>> -- > > >>> [ ERC ResiBots: http://www.resibots.eu ] > > >>> [ Web: http://members.loria.fr/JBMouret ] > > >>> > > >>> — > > >>> You are receiving this because you authored the thread. > > >>> Reply to this email directly, view it on GitHub > > >>> <#71# issuecomment-362511625 > >, > > >>> or mute the thread > > >>> < > > https://github.com/notifications/unsubscribe-auth/AMmtrJvN0VC1y_ > VNWHPDHGGhflBmiq65ks5tQr5dgaJpZM4R1HPf > > > > > > >>> . > > >>> > > >> > > >> > > > > > > > — > > You are receiving this because you commented. > > > > > > Reply to this email directly, view it on GitHub > > <#71 (comment)>, > or > mute > > the thread > > <https://github.com/notifications/unsubscribe- > auth/AFu8v8NDD0-93X_PMFDL0H1X-1wPYjXOks5tQ-ZigaJpZM4R1HPf> > > > . > > > > > -- > [ ERC ResiBots: http://www.resibots.eu ] > [ Web: http://members.loria.fr/JBMouret ] > > — > You are receiving this because you authored the thread. > Reply to this email directly, view it on GitHub > <#71 (comment)>, or > mute > the thread > < > https://github.com/notifications/unsubscribe-auth/ AMmtrE2HEriDthDzwF4BRM9zQ1WvVbhnks5tQ_GxgaJpZM4R1HPf > > > . > > — > You are receiving this because you commented. > > > Reply to this email directly, view it on GitHub > <#71 (comment)>, or mute > the thread > <https://github.com/notifications/unsubscribe-auth/AFu8v1ii9419kzksR_ AhTDztEm1tyAHkks5tQ_PmgaJpZM4R1HPf> > . > -- [ ERC ResiBots: http://www.resibots.eu ] [ Web: http://members.loria.fr/JBMouret ] — You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub <#71 (comment)>, or mute the thread <https://github.com/notifications/unsubscribe-auth/AMmtrOpUHTXjRntCgnvpKPd6oDZ4vP0sks5tRA7mgaJpZM4R1HPf> .

On Sat, Feb 3, 2018 at 3:34 PM, Nick Sabaj ***@***.***> wrote: Sorry, how do you install that? I tried terminal installation, Synaptic, and the default Software package manager. None of it fixed the error. I wouldn't bother mentioning it as I don't want to over-use your time, but I do think this will be helpful for future users. On Sat, Feb 3, 2018 at 1:46 AM, JB Mouret ***@***.***> wrote: > Did you install it with the Ubuntu packages? I believe you also need to > install the boost-mpi package: > https://packages.ubuntu.com/bionic/libboost-mpi1.65-dev > > > On Sat, Feb 3, 2018, 06:51 Nick Sabaj ***@***.***> wrote: > > > Yes, the version I'm using now is 1.66; that's the version which is > giving > > me MPI issues. What Boost version do you use, and how do you suggest > > resolving the MPI issue? > > > > On Feb 2, 2018 11:42 PM, "JB Mouret" ***@***.***> wrote: > > > > Any other version of boost should work. They introduced a bug in 1.58 > that > > was corrected in 1.58. We are using more recent versions but an older > > version should work. > > > > MPI is not useful on a single computer (but tbb). The issue is that the > > recent libboost in Ubuntu does not include the boost-mpi library (to > avoid > > the openmpi reps). > > > > > > On Sat, Feb 3, 2018, 05:54 Nick Sabaj ***@***.***> wrote: > > > > > Ok, now the tests succeed, but I tried ./waf configure again, and I > got > > the > > > following error: > > > > > > Checking boost includes : 1_58 > > > Checking boost libs : lib mpi not found in lib > > > (complete log in /home/nick/Desktop/sferes2/build/config.log) > > > > > > So this is probably ok, but I wanted you to know of that hiccup, in > case > > it > > > portends disaster. I'm only currently using my laptop for this, so MPI > > > might not be an issue at the moment, but we'll probably be scaling up > to > > a > > > cluster shortly after we get this running on a laptop. > > > > > > These > > > < > > > https://askubuntu.com/questions/859333/how-to- > > install-libboost-version1-59-or-newer-on-ubuntu16-04 > > > > > > > > > instructions seemed to fix things, btw. The instructions also > mentioned > > > rebuilding Ubuntu to a more recent version, but I haven't done that > yet > > as > > > the tests passed and I wanted to make sure that wouldn't muddy the > waters > > > of troubleshooting for future users with this issue. Current plan is > to > > try > > > playing around with sferes, and see if it crashes, unless you indicate > > that > > > the MPI is critical, and might be worth exploring. > > > > > > On Fri, Feb 2, 2018 at 7:15 PM, Nick Sabaj ***@***.***> > > > wrote: > > > > > > > The comments in bit_string.hpp specify to not use version 1.58 of > > Boost, > > > > but don't say what version of Boost is known to work. > > > > > > > > On Fri, Feb 2, 2018 at 7:10 PM, Nick Sabaj ***@***.*** > > > > > > wrote: > > > > > > > >> Currently using 1.58 > > > >> Sorry for the slow response- delayed throughout the day until now. > > > >> Which Boost version should I use? I'll check older and newer > versions, > > > >> but I'd love to know the best choice, to prevent later issues. > > > >> > > > >> On Fri, Feb 2, 2018 at 1:50 AM, JB Mouret < > ***@***.***> > > > >> wrote: > > > >> > > > >>> Thank you. Which version of boost do you use? > > > >>> > > > >>> > > > >>> On Fri, Feb 2, 2018 at 8:22 AM Nick Sabaj < > ***@***.***> > > > >>> wrote: > > > >>> > > > >>> > Hi again; the tests you specified show a single failure, a fatal > > > error > > > >>> in > > > >>> > "bitstring_serialize" and "bitstring_serialize_long". > > > >>> > I think it's related to this section I noticed in the terminal: > > > >>> > > > > >>> > [33/44] Compiling tests/gen/bit_string.cpp > > > >>> > In file included from ../tests/gen/bit_string.cpp:38:0: > > > >>> > /home/nick/Desktop/sferes2/sferes/gen/bit_string.hpp:54:3: > warning: > > > >>> > #warning DO NOT use bit_string with boost 1.58 (bug in the > > > >>> serialization > > > >>> > library) [-Wcpp] > > > >>> > # warning DO NOT use bit_string with boost 1.58 (bug in the > > > >>> serialization > > > >>> > library) > > > >>> > > > > >>> > Since the only failing test is tests_gen_bit_string, I think > it's > > > >>> probably > > > >>> > just a boost version issue. I'll try playing around with it to > fix > > > >>> things; > > > >>> > I'll send you whatever the solution ends up being. > > > >>> > > > > >>> > > > > >>> > On Thu, Feb 1, 2018 at 10:39 AM, Nick Sabaj < > > ***@***.*** > > > > > > > >>> > wrote: > > > >>> > > > > >>> > > Awesome, thank you! I hope you have a wonderful day! > > > >>> > > > > > >>> > > On Thu, Feb 1, 2018 at 3:32 AM, Konstantinos Chatzilygeroudis > < > > > >>> > > ***@***.***> wrote: > > > >>> > > > > > >>> > >> You should run ./waf --tests to run the tests. We updated the > > > >>> wscript > > > >>> > >> (and waf) and most probably did not update the docs..! > > > >>> > >> > > > >>> > >> — > > > >>> > >> You are receiving this because you authored the thread. > > > >>> > >> Reply to this email directly, view it on GitHub > > > >>> > >> <#71 (comment) > > > >>> 62209227>, > > > >>> > >> or mute the thread > > > >>> > >> < > > > >>> > https://github.com/notifications/unsubscribe-auth/AMmtrHdXXa > > > >>> 1kYt3adYedMdJeQJfPEsCZks5tQYSUgaJpZM4R1HPf > > > >>> > > > > > >>> > >> . > > > >>> > >> > > > >>> > > > > > >>> > > > > > >>> > > > > >>> > — > > > >>> > You are receiving this because you commented. > > > >>> > > > > >>> > > > > >>> > Reply to this email directly, view it on GitHub > > > >>> > < > > #71 (comment) > > > >, > > > >>> or mute > > > >>> > the thread > > > >>> > <https://github.com/notifications/unsubscribe-auth/AFu8v3IPW > > > >>> A7y61Q6HVUhXf2bainJCuKlks5tQrfDgaJpZM4R1HPf> > > > >>> > . > > > >>> > > > > >>> -- > > > >>> [ ERC ResiBots: http://www.resibots.eu ] > > > >>> [ Web: http://members.loria.fr/JBMouret ] > > > >>> > > > >>> — > > > >>> You are receiving this because you authored the thread. > > > >>> Reply to this email directly, view it on GitHub > > > >>> <#71 (comment)- > 362511625 > > >, > > > >>> or mute the thread > > > >>> < > > > https://github.com/notifications/unsubscribe-auth/AMmtrJvN0VC1y_ > > VNWHPDHGGhflBmiq65ks5tQr5dgaJpZM4R1HPf > > > > > > > > > >>> . > > > >>> > > > >> > > > >> > > > > > > > > > > — > > > You are receiving this because you commented. > > > > > > > > > Reply to this email directly, view it on GitHub > > > <#71 (comment) > >, > > or > > mute > > > the thread > > > <https://github.com/notifications/unsubscribe- > > auth/AFu8v8NDD0-93X_PMFDL0H1X-1wPYjXOks5tQ-ZigaJpZM4R1HPf> > > > > > . > > > > > > > > > -- > > [ ERC ResiBots: http://www.resibots.eu ] > > [ Web: http://members.loria.fr/JBMouret ] > > > > — > > You are receiving this because you authored the thread. > > Reply to this email directly, view it on GitHub > > <#71 (comment)>, > or > > mute > > the thread > > < > > https://github.com/notifications/unsubscribe-auth/AMmtrE2HEr > iDthDzwF4BRM9zQ1WvVbhnks5tQ_GxgaJpZM4R1HPf > > > > > . > > > > — > > You are receiving this because you commented. > > > > > > Reply to this email directly, view it on GitHub > > <#71 (comment)>, > or mute > > the thread > > <https://github.com/notifications/unsubscribe-auth/ > AFu8v1ii9419kzksR_AhTDztEm1tyAHkks5tQ_PmgaJpZM4R1HPf> > > > . > > > > > -- > [ ERC ResiBots: http://www.resibots.eu ] > [ Web: http://members.loria.fr/JBMouret ] > > — > You are receiving this because you authored the thread. > Reply to this email directly, view it on GitHub > <#71 (comment)>, > or mute the thread > <https://github.com/notifications/unsubscribe-auth/AMmtrOpUHTXjRntCgnvpKPd6oDZ4vP0sks5tRA7mgaJpZM4R1HPf> > . >

On Sat, Feb 10, 2018 at 5:53 PM, Nick Sabaj ***@***.***> wrote: How do you run the default experiment described on this <https://github.com/sferes2/sferes2/wiki/Tutorial1> page? I've tried a variety of approaches, searched online for ideas and tried those too, and nothing has worked. Everything I try tends to return a 'No function' error. I'm CC'ing the professor I work for in case he has any ideas. On Sat, Feb 3, 2018 at 3:34 PM, Nick Sabaj ***@***.***> wrote: > Sorry, how do you install that? I tried terminal installation, Synaptic, > and the default Software package manager. None of it fixed the error. I > wouldn't bother mentioning it as I don't want to over-use your time, but I > do think this will be helpful for future users. > > On Sat, Feb 3, 2018 at 1:46 AM, JB Mouret ***@***.***> > wrote: > >> Did you install it with the Ubuntu packages? I believe you also need to >> install the boost-mpi package: >> https://packages.ubuntu.com/bionic/libboost-mpi1.65-dev >> >> >> On Sat, Feb 3, 2018, 06:51 Nick Sabaj ***@***.***> wrote: >> >> > Yes, the version I'm using now is 1.66; that's the version which is >> giving >> > me MPI issues. What Boost version do you use, and how do you suggest >> > resolving the MPI issue? >> > >> > On Feb 2, 2018 11:42 PM, "JB Mouret" ***@***.***> wrote: >> > >> > Any other version of boost should work. They introduced a bug in 1.58 >> that >> > was corrected in 1.58. We are using more recent versions but an older >> > version should work. >> > >> > MPI is not useful on a single computer (but tbb). The issue is that the >> > recent libboost in Ubuntu does not include the boost-mpi library (to >> avoid >> > the openmpi reps). >> > >> > >> > On Sat, Feb 3, 2018, 05:54 Nick Sabaj ***@***.***> >> wrote: >> > >> > > Ok, now the tests succeed, but I tried ./waf configure again, and I >> got >> > the >> > > following error: >> > > >> > > Checking boost includes : 1_58 >> > > Checking boost libs : lib mpi not found in lib >> > > (complete log in /home/nick/Desktop/sferes2/build/config.log) >> > > >> > > So this is probably ok, but I wanted you to know of that hiccup, in >> case >> > it >> > > portends disaster. I'm only currently using my laptop for this, so >> MPI >> > > might not be an issue at the moment, but we'll probably be scaling >> up to >> > a >> > > cluster shortly after we get this running on a laptop. >> > > >> > > These >> > > < >> > > https://askubuntu.com/questions/859333/how-to- >> > install-libboost-version1-59-or-newer-on-ubuntu16-04 >> > >> > > > >> > > instructions seemed to fix things, btw. The instructions also >> mentioned >> > > rebuilding Ubuntu to a more recent version, but I haven't done that >> yet >> > as >> > > the tests passed and I wanted to make sure that wouldn't muddy the >> waters >> > > of troubleshooting for future users with this issue. Current plan is >> to >> > try >> > > playing around with sferes, and see if it crashes, unless you >> indicate >> > that >> > > the MPI is critical, and might be worth exploring. >> > > >> > > On Fri, Feb 2, 2018 at 7:15 PM, Nick Sabaj ***@***.***> >> > > wrote: >> > > >> > > > The comments in bit_string.hpp specify to not use version 1.58 of >> > Boost, >> > > > but don't say what version of Boost is known to work. >> > > > >> > > > On Fri, Feb 2, 2018 at 7:10 PM, Nick Sabaj < >> ***@***.***> >> > > > wrote: >> > > > >> > > >> Currently using 1.58 >> > > >> Sorry for the slow response- delayed throughout the day until now. >> > > >> Which Boost version should I use? I'll check older and newer >> versions, >> > > >> but I'd love to know the best choice, to prevent later issues. >> > > >> >> > > >> On Fri, Feb 2, 2018 at 1:50 AM, JB Mouret < >> ***@***.***> >> > > >> wrote: >> > > >> >> > > >>> Thank you. Which version of boost do you use? >> > > >>> >> > > >>> >> > > >>> On Fri, Feb 2, 2018 at 8:22 AM Nick Sabaj < >> ***@***.***> >> > > >>> wrote: >> > > >>> >> > > >>> > Hi again; the tests you specified show a single failure, a >> fatal >> > > error >> > > >>> in >> > > >>> > "bitstring_serialize" and "bitstring_serialize_long". >> > > >>> > I think it's related to this section I noticed in the terminal: >> > > >>> > >> > > >>> > [33/44] Compiling tests/gen/bit_string.cpp >> > > >>> > In file included from ../tests/gen/bit_string.cpp:38:0: >> > > >>> > /home/nick/Desktop/sferes2/sferes/gen/bit_string.hpp:54:3: >> warning: >> > > >>> > #warning DO NOT use bit_string with boost 1.58 (bug in the >> > > >>> serialization >> > > >>> > library) [-Wcpp] >> > > >>> > # warning DO NOT use bit_string with boost 1.58 (bug in the >> > > >>> serialization >> > > >>> > library) >> > > >>> > >> > > >>> > Since the only failing test is tests_gen_bit_string, I think >> it's >> > > >>> probably >> > > >>> > just a boost version issue. I'll try playing around with it to >> fix >> > > >>> things; >> > > >>> > I'll send you whatever the solution ends up being. >> > > >>> > >> > > >>> > >> > > >>> > On Thu, Feb 1, 2018 at 10:39 AM, Nick Sabaj < >> > ***@***.*** >> > > > >> > > >>> > wrote: >> > > >>> > >> > > >>> > > Awesome, thank you! I hope you have a wonderful day! >> > > >>> > > >> > > >>> > > On Thu, Feb 1, 2018 at 3:32 AM, Konstantinos >> Chatzilygeroudis < >> > > >>> > > ***@***.***> wrote: >> > > >>> > > >> > > >>> > >> You should run ./waf --tests to run the tests. We updated >> the >> > > >>> wscript >> > > >>> > >> (and waf) and most probably did not update the docs..! >> > > >>> > >> >> > > >>> > >> — >> > > >>> > >> You are receiving this because you authored the thread. >> > > >>> > >> Reply to this email directly, view it on GitHub >> > > >>> > >> <https://github.com/sferes2/sf >> eres2/issues/71#issuecomment-3 >> > > >>> 62209227>, >> > > >>> > >> or mute the thread >> > > >>> > >> < >> > > >>> > https://github.com/notifications/unsubscribe-auth/AMmtrHdXXa >> > > >>> 1kYt3adYedMdJeQJfPEsCZks5tQYSUgaJpZM4R1HPf >> > > >>> > > >> > > >>> > >> . >> > > >>> > >> >> > > >>> > > >> > > >>> > > >> > > >>> > >> > > >>> > — >> > > >>> > You are receiving this because you commented. >> > > >>> > >> > > >>> > >> > > >>> > Reply to this email directly, view it on GitHub >> > > >>> > < >> > #71 (comment) >> > > >, >> > > >>> or mute >> > > >>> > the thread >> > > >>> > <https://github.com/notifications/unsubscribe-auth/AFu8v3IPW >> > > >>> A7y61Q6HVUhXf2bainJCuKlks5tQrfDgaJpZM4R1HPf> >> > > >>> > . >> > > >>> > >> > > >>> -- >> > > >>> [ ERC ResiBots: http://www.resibots.eu ] >> > > >>> [ Web: http://members.loria.fr/JBMouret ] >> > > >>> >> > > >>> — >> > > >>> You are receiving this because you authored the thread. >> > > >>> Reply to this email directly, view it on GitHub >> > > >>> <#71 (comment) >> 62511625 >> > >, >> > > >>> or mute the thread >> > > >>> < >> > > https://github.com/notifications/unsubscribe-auth/AMmtrJvN0VC1y_ >> > VNWHPDHGGhflBmiq65ks5tQr5dgaJpZM4R1HPf >> > >> > > > >> > > >>> . >> > > >>> >> > > >> >> > > >> >> > > > >> > > >> > > — >> > > You are receiving this because you commented. >> > > >> > > >> > > Reply to this email directly, view it on GitHub >> > > <#71 (comment) >> >, >> > or >> > mute >> > > the thread >> > > <https://github.com/notifications/unsubscribe- >> > auth/AFu8v8NDD0-93X_PMFDL0H1X-1wPYjXOks5tQ-ZigaJpZM4R1HPf> >> > >> > > . >> > > >> > >> > >> > -- >> > [ ERC ResiBots: http://www.resibots.eu ] >> > [ Web: http://members.loria.fr/JBMouret ] >> > >> > — >> > You are receiving this because you authored the thread. >> > Reply to this email directly, view it on GitHub >> > <#71 (comment)>, >> or >> > mute >> > the thread >> > < >> > https://github.com/notifications/unsubscribe-auth/AMmtrE2HEr >> iDthDzwF4BRM9zQ1WvVbhnks5tQ_GxgaJpZM4R1HPf >> > > >> > . >> > >> > — >> > You are receiving this because you commented. >> > >> > >> > Reply to this email directly, view it on GitHub >> > <#71 (comment)>, >> or mute >> > the thread >> > <https://github.com/notifications/unsubscribe-auth/AFu8v1ii9 >> 419kzksR_AhTDztEm1tyAHkks5tQ_PmgaJpZM4R1HPf> >> >> > . >> > >> >> >> -- >> [ ERC ResiBots: http://www.resibots.eu ] >> [ Web: http://members.loria.fr/JBMouret ] >> >> — >> You are receiving this because you authored the thread. >> Reply to this email directly, view it on GitHub >> <#71 (comment)>, >> or mute the thread >> <https://github.com/notifications/unsubscribe-auth/AMmtrOpUHTXjRntCgnvpKPd6oDZ4vP0sks5tRA7mgaJpZM4R1HPf> >> . >> > >

On Feb 11, 2018 12:28 PM, "JB Mouret" ***@***.***> wrote: You need to remove 'debug' in the path (we changed the system and apparently we forgot to update the documentation). You need to run: build/examples/ex_ea -- [ ERC ResiBots: http://www.resibots.eu ] [ Web: http://members.loria.fr/JBMouret ] — You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub <#71 (comment)>, or mute the thread <https://github.com/notifications/unsubscribe-auth/AMmtrIPZqaXww4Hb7WU95eL6oPSWAUEoks5tTzFHgaJpZM4R1HPf> .

On Feb 12, 2018 2:09 AM, "JB Mouret" ***@***.***> wrote: The fitness function in ex_ea is f(x) = -x*x*x*x [image: screen shot 2018-02-12 at 09 02 32] <https://user-images.githubusercontent.com/6012095/36087606-8d34be26-0fd3-11e8-9f42-fdad697e4900.png> The optimum is obviously for x=0 and the fitness is 0. We maximize the fitness, therefore the values are initially negative (- something) and the maximum is -0 For the result files, there are two kinds of result files: *.dat files and gen_* files. `.dat' files should be easy to read. For instance, I get: 1 360 -0 2 440 -0 3 520 -0 4 600 -0 5 680 -0 6 760 -0 7 840 -0 8 920 -0 9 1000 -0 First column is the generation number, second is the number of evaluations, and 3rd is the best fitness so far. gen_* files are designed to be read by sferes (here `ex_ea') itself via the --load (and the fit::view mode). By default they are binary files (to save space). If you want to read them anyway, you can switch to XML files by defining SFERES_XML_WRITE (#define SFERES_XML_WRITE at the beginning of ex_ea), but these XML files are generated by boost and might not be straighforward to parse. — You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub <#71 (comment)>, or mute the thread <https://github.com/notifications/unsubscribe-auth/AMmtrDQYYjWUlVeAWAbF2esO1uEoZS08ks5tT_GqgaJpZM4R1HPf> .