Comments (1)
Hi Tim,
Thank you for your interest in centroFlye. It is difficult to tell what the parameter selection will be optimal without seeing the data. I suggest to select different parameters and check the resulting assemblies. You can use VerityMap to validate the resulting assembly https://github.com/ablab/VerityMap. Having said that, I am not actively maintaining centroFlye as I switched to assembly using more accurate HiFi reads with LJA assembler https://github.com/AntonBankevich/LJA. Sorry that I can't be more of help.
Andrey
from centroflye.
Related Issues (17)
- results_cenX/centromeric_reads HOT 30
- results_cenX/polishing HOT 63
- jupyter/_Identifying_rare_centromeric_k-mers HOT 1
- centroFlye/rare_k-mers HOT 3
- results_cenX/DXZ1 HOT 8
- how to identify the monomer and HOR sequence HOT 1
- centromeric reads HOT 1
- better_consensus_unit_reconstruction HOT 1
- Unable to clone submodules HOT 2
- Tag a release
- Duplicate centromeric reads HOT 6
- rr.cpp Assertion `false' failed. line 24 HOT 4
- not an issue but a general question HOT 1
- scripts/ext/stringdecomposer/longreads_decomposer.py is not found HOT 2
- [Consulation] HOT 3
- results_cenX/centromeric_reads
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from centroflye.