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alexander-bzikadze avatar alexander-bzikadze commented on July 23, 2024

Dear Jin-Young,

In order to clone the repo using ssh is required.

When address is specified like [email protected]:seryrzu/centroFlye.git ssh is used and when like https://github.com/seryrzu/centroFlye.git https is used. However, submodule addresses are currently specified as ssh addresses, therefore even when cloning via https submodules are cloned via ssh.

In order to properly clone the repo ssh setup is required on the server. Kindly refer to Github guide of setting up ssh keys.

Best regards,
Alexander

from centroflye.

hd00ljy avatar hd00ljy commented on July 23, 2024

Dear Alexander,

Thank you for your kind help and I am so sorry that I bothered you with the very elementary features of Github.

I followed the Github guide and successfully cloned the centroFlye.

command

git clone --recurse-submodules --single-branch --branch cF_NatBiotech_paper_Xv0.8.3-6v0.1.3 [email protected]:seryrzu/centroFlye.git

result

Cloning into 'centroFlye'...
remote: Enumerating objects: 683, done.
remote: Total 683 (delta 0), reused 0 (delta 0), pack-reused 683
Receiving objects: 100% (683/683), 2.45 MiB | 44.00 KiB/s, done.
Resolving deltas: 100% (432/432), done.
Submodule 'scripts/ext/stringdecomposer' ([email protected]:ablab/stringdecomposer.git) registered for path 'scripts/ext/stringdecomposer'
Submodule 'scripts/ext/tandemQUAST' ([email protected]:ablab/tandemQUAST.git) registered for path 'scripts/ext/tandemQUAST'
Cloning into 'scripts/ext/stringdecomposer'...
remote: Enumerating objects: 199, done.
remote: Counting objects: 100% (199/199), done.
remote: Compressing objects: 100% (127/127), done.
remote: Total 1086 (delta 139), reused 126 (delta 70), pack-reused 887
Receiving objects: 100% (1086/1086), 6.05 MiB | 1.87 MiB/s, done.
Resolving deltas: 100% (649/649), done.
Submodule path 'scripts/ext/stringdecomposer': checked out '83640e3388be7766837e29384884421955ca3126'
Cloning into 'scripts/ext/tandemQUAST'...
remote: Enumerating objects: 804, done.
remote: Counting objects: 100% (804/804), done.
remote: Compressing objects: 100% (646/646), done.
remote: Total 804 (delta 260), reused 697 (delta 153), pack-reused 0
Receiving objects: 100% (804/804), 31.76 MiB | 3.08 MiB/s, done.
Resolving deltas: 100% (260/260), done.
Submodule path 'scripts/ext/tandemQUAST': checked out '15368941c15681ba9353a97f3542bb3ada149287'

Thank you very much again!
Jin-Young

from centroflye.

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