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License: Other
Fork of seqan/flexbar by @catkira
License: Other
This is a fork of seqan_flexbar* which can be found at https://github.com/seqan/seqan/tree/master/apps/seqan_flexbar It has been extended and modified in the following ways - added support for multiple adapters - added support for 5'-end adapters - enhanced statistic output of adapter trimming - added feature to write trimmed sequences to id line - added feature to write statistics to file - switched the multithreading design from openMP to std::thread and semaphores - rewrote most parts of the program, with a generic programming approach In the future, we plan to integrate flexcat into flexbar. seqan_flexbar by Sebastian Roskosch is implemented after seqan, if you use it, please cite [1] Dodt, M.; Roehr, J.T.; Ahmed, R.; Dieterich, " C. "FLEXBAR—Flexible Barcode and Adapter Processing for Next-Generation Sequencing Platforms. Biology 2012, 1, 895-905.
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