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cern-roll's Introduction

SDSC "cern" roll

Overview

The SDSC cern-roll bundles software tools published by CERN into a Rocks(r) roll that can be installed easily on a Rocks(r) cluster.

root packages for curve fitting, plotting, high energy physics computations and data analysis

geant (Geometry ANd Tracking) simulates particles passing through matter via Monte Carlo methods

clhep (Class Library for High Energy Physics). Math libraries for vector math, random number generation and linear algebra

Requirements

To build/install this roll you must have root access to a Rocks development machine (e.g., a frontend or development appliance).

If your Rocks development machine does not have Internet access you must download the appropriate cern source file(s) using a machine that does have Internet access and copy them into the src/cern directories on your Rocks development machine.

Dependencies

The sdsc-roll must be installed on the build machine, since the build process depends on make include files provided by that roll.

The roll sources assume that modulefiles provided by SDSC gnucompiler and cmake rolls are available, but it will build without them as long as the environment variables they provide are otherwise defined.

Building

To build the cern-roll, execute this on a Rocks development machine (e.g., a frontend or development appliance):

% make 2>&1 | tee build.log

A successful build will create the file cern-*.disk1.iso. If you built the roll on a Rocks frontend, proceed to the installation step. If you built the roll on a Rocks development appliance, you need to copy the roll to your Rocks frontend before continuing with installation.

Installation

To install, execute these instructions on a Rocks frontend:

% rocks add roll *.iso
% rocks enable roll cern
% cd /export/rocks/install
% rocks create distro

Subsequent installs of compute and login nodes will then include the contents of the cern-roll. To avoid cluttering the cluster frontend with unused software, the cern-roll is configured to install only on compute and login nodes. To force installation on your frontend, run this command after adding the cern-roll to your distro

% rocks run roll cern host=NAME | bash

where NAME is the DNS name of a compute or login node in your cluster.

In addition to the software itself, the roll installs cern environment module files in:

/opt/modulefiles/applications/cern

Testing

The cern-roll includes a test script which can be run to verify proper installation of the roll documentation, binaries and module files. To run the test scripts execute the following command(s):

% /root/rolltests/cern.t 

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cern-roll's Issues

cern-roll installation on rocks cluster version 6.2

I download this roll into my machine in /root/extraRoll/cern dir. After unzip the code, I executed the
command make, after many lines and some download, process is hang with following line:

...
::: Downloading http://forge.sdsc.edu/triton/cern/src/root/root_v6.02.05.source.tar.gz :::
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- 0:00:01 --:--:-- 0
curl: (22) The requested URL returned error: 404 Not Found
::: Verifying size of root_v6.02.05.source.tar.gz :::
/usr/bin/stat: cannot stat `root_v6.02.05.source.tar.gz': No such file or directory

I am new guy for rocks cluster and adding new roll, please help me.
Thanks

System hangs while building

I am trying to install the CERN roll on a Rocks Cluster version 6.2.

I have previously installed the SDSC roll, the cmake roll, and the gnucompiler roll.

After entering the "make 2>&1" command, the system will eventually hang or freeze entirely. This does not happen at the same point in the process every time I try it, but does always seem to happen while "Building CXX object. . . ". I have left the cluster in that state for 24 hours and it has remained frozen, so I do not think it will eventually complete.

When I run the make command with the "-d" flag to include debug information, it does not hang but instead stops with an error 2.

I have included the logs from two attempts at building without the debug information (showing it stopping at different points in the process) and one build log with the debug information.

I would be grateful for any assistance you could give me with this problem. I looked in the previous issues and saw a similar problem posted there that was the result of the / partition becoming full, but this is not the case for me (I have over 40 gigabytes free).

cernrollbuilddebuglog.txt
cernrollbuild2log.txt
cernrollbuild1log.txt

cern-roll installation problem

Hello,

We are having difficulties with cern-roll installation:

  • cern-roll is getting installed on a cluster under Rocks version 6.2.
  • The following rolls were installed:
    ganglia: 6.2, x86_64
    kernel: 6.2 x86_64
    hpc: 6.2 x86_64
    perfSONAR: 3.4.2 x86_64
    web-server: 6.2 x86_64
    python: 6.2 x86_64
    java: 6.2 x86_64
    base: 6.2 x86_64
    perl: 6.2 x86_64
    sge: 6.2 x86_64
    os: 6.2 x86_64
    sdsc: master.0 x86_64
    cmake: master.0 x86_64
    gnucompiler: master.0 x86_64
  • All tests for sdsc, cmake and gnucompiler rolls returned "OK"
  • When we install cern-roll, the system is getting “frozen” during make stage, i.e. during executing make 2>&1 | tee build.log.
    Last line in build.log looks like:

[52%] Building CXX object CMakeFiles/CLHEP.dir/Random/src

After that the system just “hangs” there for hours/days.

Any suggestion would be greatly appreciated.

Thank you,
Ivan

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