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funmap's Issues

Parse error when running experiments

Hi,

I am trying to reproduce your experiments (ISWC reproducibility branch) but the run.sh script throws a parse error

(standard_in) 1: illegal character: N
(standard_in) 1: parse error

at each iteration.

This propagates through the other scripts (the run-rdb.sh script outputs the following:

---------Experiments over RDB with SDM-RDFizer 
(note that experiments with complex_sameFunction10_RDB_5millionRecords.ttl could not finish in SDM-RDFizer configuration ---------
sed: 1: "config-rdb-funmap.ini": command c expects \ followed by text
sed: 1: "config-rdb-SDM.ini": command c expects \ followed by text

preventing result outputs to be generated.

Could you help me with that?

Cheers,

ilaria

Prepare a zip file with code and resources for the submission

@eiglesias34 please go ahead and contact me if you need any help

  • README/Instructions on how to run the experiments
  • Dockerfile and docker-compose for all the approaches
  • Downloading script for the input data (we can upload a zip file to google drive)
  • Mappings
  • Running scripts
  • DOI for the engine with Zenodo

error when an input mapping has a joinCondition

When a mapping has an rr:joinCondition in a POM, FunMap produces an error:

Traceback (most recent call last):
  File "run_translator.py", line 3, in <module>
    translate(str(sys.argv[1]))
  File "/Users/dchaves/Documents/proyectos/tib/FunMap/translator/translate.py", line 362, in translate
    reader = pd.read_csv(triples_map.data_source, usecols=fields.keys())
  File "/Users/dchaves/anaconda3/lib/python3.7/site-packages/pandas/io/parsers.py", line 702, in parser_f
    return _read(filepath_or_buffer, kwds)
  File "/Users/dchaves/anaconda3/lib/python3.7/site-packages/pandas/io/parsers.py", line 429, in _read
    parser = TextFileReader(filepath_or_buffer, **kwds)
  File "/Users/dchaves/anaconda3/lib/python3.7/site-packages/pandas/io/parsers.py", line 895, in __init__
    self._make_engine(self.engine)
  File "/Users/dchaves/anaconda3/lib/python3.7/site-packages/pandas/io/parsers.py", line 1122, in _make_engine
    self._engine = CParserWrapper(self.f, **self.options)
  File "/Users/dchaves/anaconda3/lib/python3.7/site-packages/pandas/io/parsers.py", line 1895, in __init__
    _validate_usecols_names(usecols, self.orig_names)
  File "/Users/dchaves/anaconda3/lib/python3.7/site-packages/pandas/io/parsers.py", line 1237, in _validate_usecols_names
    "columns expected but not found: {missing}".format(missing=missing)
ValueError: Usecols do not match columns, columns expected but not found: ['http://MapFun.KG/#idRoute']

The zip file contains 2 csvs, 1 mapping and the functions.py with the new function implemented.
data.zip

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