Comments (6)
from genomescope.
Thank Mike,
Is it possible due to the high heterozygosity of my genome, which caused the high rate of errors?
Best,
Lingyun Chen
from genomescope.
from genomescope.
Hi Lingyun @lychen83,
I am having a very similar plot as yours. Did you collect additional data and did more data give you a better plot?
Thanks!
Ying
from genomescope.
from genomescope.
Thank you Lingyun for your reply! That's scary to hear. Did your assembly work?
Thanks again!
Ying
from genomescope.
Related Issues (20)
- Low model fit while ran Genomescope 2.0
- Strange genomescope result HOT 1
- High heterozygous? HOT 3
- No file upload message HOT 1
- Unable to converge HOT 3
- 503 Service Unavailable HOT 2
- mergeing HiFi data of two samples didn't increase hetorozygosity
- Heterozygosity rate < 0 HOT 3
- expectations for pooled samples HOT 2
- Heterozygous tetraploid genome model fit HOT 2
- GenomeScope Output from PacBio Hifi ccs Reads is Confounding HOT 3
- Model and observations don't converge HOT 3
- dup (in figure) and bias (in model.txt) HOT 2
- Follow up RE: Confounding GenomeScope Output HOT 5
- Ploidy determination HOT 1
- Heterozygous peak identified as errors? HOT 3
- Estimated genome size is half HOT 2
- Should a larger K value be chosen? HOT 1
- Is command line for ploidy different? HOT 4
- Please help me to understand output
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from genomescope.