Comments (3)
fperezcobos
commented on September 16, 2024
1
Hi,
I had the same problem, PacBio HiFi sequences of a diploid plant species and the plot looks like this:
Any help?
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SamCT
commented on September 16, 2024
Also seeing this with one of our genomes. Of a lot of four Revio SMRT cells (all the same species) one plot looks like the above. This particular SMRT cell that has this plot has a much higher number of reads than others, but besides that nothing stands out. The other three plots looked reasonable. I'm curious to know what is causing this
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Related Issues (20)
- FAQ not up to date regarding ploidy HOT 1
- No file uploaded error message HOT 3
- Low model fit while ran Genomescope 2.0
- Strange genomescope result HOT 1
- High heterozygous? HOT 3
- No file upload message HOT 1
- Unable to converge HOT 3
- 503 Service Unavailable HOT 2
- mergeing HiFi data of two samples didn't increase hetorozygosity
- Heterozygosity rate < 0 HOT 3
- expectations for pooled samples HOT 2
- Heterozygous tetraploid genome model fit HOT 2
- GenomeScope Output from PacBio Hifi ccs Reads is Confounding HOT 3
- Model and observations don't converge HOT 3
- dup (in figure) and bias (in model.txt) HOT 2
- Follow up RE: Confounding GenomeScope Output HOT 5
- Ploidy determination HOT 2
- Estimated genome size is half HOT 2
- Should a larger K value be chosen? HOT 1
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