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aaags_2018

Course Materials for AAAGs 2018 Workshop

adjective

Programming is an exercise in linguistics; spice-up Scala types with Adjective.

advanced-functional-design

The material for the Advanced Functional Design workshop

advanced-zio

The material for the Advanced ZIO Workshop.

airstream

State propagation and event streams with mandatory ownership and no glitches

akka-vs-scalaz

alpaca-lora

Instruct-tune LLaMA on consumer hardware

alpaca.cpp

Locally run an Instruction-Tuned Chat-Style LLM

android-file-transfer-linux

Android File Transfer for Linux

annotsv

Annotation and Ranking of Structural Variation

app-phenotips

BIBBOX phenotips application

archery

2D R-Tree implementation in Scala

arrows

High-performance Arrow and Task in Scala

bash4s

Bash dsl for Scala

bioanalytics4s

biocantor

biojava

:book::microscope::coffee: BioJava is an open-source project dedicated to providing a Java library for processing biological data.

bioscala

Bioinformatics for the Scala programming language

bless

Bless is a high quality, full featured hex editor.

book

Crypto 101, the introductory book on cryptography.

bootstrap-connector

Helper class for Open Office command line connection

breakdancer

SV detection from paired end reads mapping

breeze

Breeze is a numerical processing library for Scala.

bwa

Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)

calclog

Typesafe, loggable, and DRY calculations for the less monadically inclined.

caliban

Functional GraphQL backend in Scala

canvas

Canvas - Copy number variant (CNV) calling from DNA sequencing data

cassovary

Cassovary is a simple big graph processing library for the JVM

ceph-dnm-manuscript

Code used for figure generation and statistical analysis for https://www.biorxiv.org/content/10.1101/552117v1

cerebral

Declarative state and side effects management for popular JavaScript frameworks