This repository provides the code for our research regarding the extension of the Tau subgraph within the pharmacome using NLP (doi: https://doi.org/10.1016/j.ailsci.2023.100078 )

The different dataset and KG used in this study are located in data directory. These files include:

-) The triples from the original Tau subgraph of Human Brain Pharmacome (HBP), which focuses on the context of pTau

-) The NLP training dataset which is generated by combining several published KGs that were built by expert manual curation on various topics such as AD or Parkinson’s Disease.

-)The high-quality triples that are extracted by the NLP pipeline and manually evaluated.

The code directory contains the following scripts:

-)The script for the extraction of PubMed ids of the extension corpus

-)The script for analyzing the NLP-based KG.

-)The script for analyzing the training dataset