I am using WSL2 with Conda to run this tutorial, some pointers to set it up in my blog: https://matinnuhamunada.github.io/posts/2021/04/jupyter-wsl2/
- Clone (or perhaps its better to fork?) the repository to your PC. In my case, I start by running the ubuntu terminal and type:
git clone [email protected]:iGEM-UGM/2021-igem-ugm-model.git
# move to the cloned repo
cd 2021-igem-ugm-model
- Install the Conda environment required using the yml file:
conda env create -f envs/ugm.yml
- Activate the environment:
conda activate 2021-ugm-modelling-env
- Run Jupyter Lab
jupyter lab
# Open Jupyter in a browser by copy-paste the url given
- Video tutorial here: https://drive.google.com/file/d/1XYOH8r_zDZsPCQwluGJOaOGtDzJPJSM6/view?usp=sharing
-
Run the notebook
-
There might be trouble installing Escher Jupyter widget. You can solve it by following the escher docs:
# The notebook extenstion should install automatically. You can check by running:
jupyter nbextension list
# Make sure you have version >=5 of the `notebook` package
pip install "notebook>=5"
# To manually install the extension
jupyter nbextension install --py --sys-prefix escher
jupyter nbextension enable --py --sys-prefix escher
# depending on you environment, you might need the `--sysprefix` flag with those commands
jupyter labextension install @jupyter-widgets/jupyterlab-manager
jupyter labextension install escher
- Video tutorial here: https://drive.google.com/file/d/1HONYDWtZhTv2Kvi2mhQ6P5gshvXd936A/view?usp=sharing
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